Experiment: AgroPhage_B07
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0648 and Atu0649 are separated by 168 nucleotides Atu0649 and Atu0650 are separated by 152 nucleotides
Atu0648: Atu0648 - hypothetical protein, at 638,958 to 641,282
Atu0648
Atu0649: Atu0649 - cyclopropane-fatty-acyl-phospholipid synthase, at 641,451 to 642,707
Atu0649
Atu0650: Atu0650 - hypothetical protein, at 642,860 to 643,660
Atu0650
Position (kb) 641
642
643 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 640.463 kb on - strand, within Atu0648 at 640.588 kb on + strand, within Atu0648 at 640.680 kb on + strand, within Atu0648 at 640.725 kb on - strand, within Atu0648 at 640.797 kb on + strand, within Atu0648 at 640.851 kb on - strand, within Atu0648 at 640.893 kb on + strand, within Atu0648 at 641.054 kb on - strand at 641.145 kb on - strand at 641.189 kb on + strand at 641.276 kb on + strand at 641.283 kb on + strand at 641.434 kb on - strand at 641.633 kb on + strand, within Atu0649 at 641.690 kb on + strand, within Atu0649 at 641.696 kb on + strand, within Atu0649 at 641.696 kb on + strand, within Atu0649 at 641.748 kb on + strand, within Atu0649 at 641.849 kb on + strand, within Atu0649 at 641.975 kb on - strand, within Atu0649 at 641.975 kb on - strand, within Atu0649 at 642.042 kb on - strand, within Atu0649 at 642.047 kb on - strand, within Atu0649 at 642.077 kb on - strand, within Atu0649 at 642.238 kb on + strand, within Atu0649 at 642.249 kb on + strand, within Atu0649 at 642.288 kb on + strand, within Atu0649 at 642.296 kb on - strand, within Atu0649 at 642.301 kb on - strand, within Atu0649 at 642.384 kb on + strand, within Atu0649 at 642.404 kb on + strand, within Atu0649 at 642.563 kb on - strand, within Atu0649 at 642.644 kb on + strand at 642.649 kb on + strand at 642.657 kb on - strand at 642.708 kb on + strand at 642.787 kb on + strand at 642.862 kb on + strand at 642.921 kb on - strand at 642.921 kb on - strand at 642.974 kb on + strand, within Atu0650 at 643.072 kb on - strand, within Atu0650 at 643.120 kb on - strand, within Atu0650 at 643.130 kb on - strand, within Atu0650 at 643.183 kb on - strand, within Atu0650 at 643.206 kb on + strand, within Atu0650 at 643.211 kb on + strand, within Atu0650 at 643.211 kb on + strand, within Atu0650 at 643.214 kb on - strand, within Atu0650 at 643.352 kb on - strand, within Atu0650 at 643.352 kb on - strand, within Atu0650 at 643.381 kb on - strand, within Atu0650 at 643.402 kb on + strand, within Atu0650 at 643.410 kb on - strand, within Atu0650 at 643.541 kb on + strand, within Atu0650 at 643.652 kb on - strand at 643.654 kb on + strand at 643.654 kb on + strand at 643.654 kb on + strand at 643.662 kb on - strand at 643.662 kb on - strand at 643.662 kb on - strand at 643.662 kb on - strand at 643.662 kb on - strand at 643.668 kb on + strand at 643.668 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_B07 remove 640,463 - Atu0648 0.65 -0.3 640,588 + Atu0648 0.70 -0.9 640,680 + Atu0648 0.74 +0.1 640,725 - Atu0648 0.76 +0.5 640,797 + Atu0648 0.79 -0.1 640,851 - Atu0648 0.81 -0.9 640,893 + Atu0648 0.83 +0.0 641,054 - -0.6 641,145 - -2.9 641,189 + +0.0 641,276 + -0.3 641,283 + +0.9 641,434 - +0.3 641,633 + Atu0649 0.14 +0.8 641,690 + Atu0649 0.19 -0.2 641,696 + Atu0649 0.19 +1.1 641,696 + Atu0649 0.19 +0.4 641,748 + Atu0649 0.24 +0.5 641,849 + Atu0649 0.32 -2.1 641,975 - Atu0649 0.42 -1.0 641,975 - Atu0649 0.42 -0.2 642,042 - Atu0649 0.47 -0.3 642,047 - Atu0649 0.47 +0.8 642,077 - Atu0649 0.50 -0.1 642,238 + Atu0649 0.63 +0.5 642,249 + Atu0649 0.63 -0.3 642,288 + Atu0649 0.67 +0.3 642,296 - Atu0649 0.67 +0.6 642,301 - Atu0649 0.68 +0.0 642,384 + Atu0649 0.74 -0.1 642,404 + Atu0649 0.76 -0.1 642,563 - Atu0649 0.88 -1.4 642,644 + +0.4 642,649 + +0.2 642,657 - +0.9 642,708 + -0.5 642,787 + -1.3 642,862 + -0.1 642,921 - +0.5 642,921 - -0.7 642,974 + Atu0650 0.14 +0.1 643,072 - Atu0650 0.26 +0.3 643,120 - Atu0650 0.32 -0.5 643,130 - Atu0650 0.34 +0.9 643,183 - Atu0650 0.40 -0.9 643,206 + Atu0650 0.43 -0.4 643,211 + Atu0650 0.44 -1.6 643,211 + Atu0650 0.44 -0.0 643,214 - Atu0650 0.44 -0.2 643,352 - Atu0650 0.61 -0.8 643,352 - Atu0650 0.61 +1.0 643,381 - Atu0650 0.65 -0.1 643,402 + Atu0650 0.68 +0.9 643,410 - Atu0650 0.69 +1.4 643,541 + Atu0650 0.85 -1.3 643,652 - -2.4 643,654 + +0.4 643,654 + +0.3 643,654 + +0.5 643,662 - -0.0 643,662 - -0.2 643,662 - -0.1 643,662 - -1.3 643,662 - +0.2 643,668 + -0.4 643,668 + -1.0
Or see this region's nucleotide sequence