Experiment: No phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu4130 and Atu4131 are separated by 4 nucleotides Atu4131 and Atu4132 are separated by 118 nucleotides
Atu4130: Atu4130 - acetoacetyl-CoA synthetase, at 1,248,929 to 1,250,884
Atu4130
Atu4131: Atu4131 - hydroxybutyrate dehydrogenase, at 1,250,889 to 1,251,674
Atu4131
Atu4132: Atu4132 - AraC family transcriptional regulator, at 1,251,793 to 1,252,836
Atu4132
Position (kb)
1250
1251
1252 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1249.898 kb on + strand, within Atu4130 at 1249.962 kb on - strand, within Atu4130 at 1250.082 kb on - strand, within Atu4130 at 1250.159 kb on + strand, within Atu4130 at 1250.159 kb on + strand, within Atu4130 at 1250.159 kb on + strand, within Atu4130 at 1250.162 kb on - strand, within Atu4130 at 1250.189 kb on + strand, within Atu4130 at 1250.246 kb on + strand, within Atu4130 at 1250.254 kb on - strand, within Atu4130 at 1250.291 kb on + strand, within Atu4130 at 1250.348 kb on - strand, within Atu4130 at 1250.435 kb on - strand, within Atu4130 at 1250.455 kb on + strand, within Atu4130 at 1250.507 kb on - strand, within Atu4130 at 1250.573 kb on - strand, within Atu4130 at 1250.601 kb on - strand, within Atu4130 at 1250.820 kb on - strand at 1250.878 kb on + strand at 1250.886 kb on - strand at 1250.922 kb on + strand at 1251.025 kb on + strand, within Atu4131 at 1251.033 kb on - strand, within Atu4131 at 1251.040 kb on + strand, within Atu4131 at 1251.254 kb on + strand, within Atu4131 at 1251.272 kb on - strand, within Atu4131 at 1251.272 kb on - strand, within Atu4131 at 1251.341 kb on + strand, within Atu4131 at 1251.343 kb on + strand, within Atu4131 at 1251.419 kb on + strand, within Atu4131 at 1251.437 kb on + strand, within Atu4131 at 1251.453 kb on + strand, within Atu4131 at 1251.455 kb on - strand, within Atu4131 at 1251.461 kb on - strand, within Atu4131 at 1251.541 kb on - strand, within Atu4131 at 1251.711 kb on + strand at 1251.803 kb on - strand at 1252.131 kb on + strand, within Atu4132 at 1252.248 kb on + strand, within Atu4132 at 1252.362 kb on - strand, within Atu4132 at 1252.438 kb on + strand, within Atu4132 at 1252.580 kb on + strand, within Atu4132 at 1252.588 kb on - strand, within Atu4132 at 1252.588 kb on - strand, within Atu4132
Per-strain Table
Position Strand Gene LocusTag Fraction No phage control remove 1,249,898 + Atu4130 0.50 -0.3 1,249,962 - Atu4130 0.53 +1.1 1,250,082 - Atu4130 0.59 -0.3 1,250,159 + Atu4130 0.63 -0.4 1,250,159 + Atu4130 0.63 -0.9 1,250,159 + Atu4130 0.63 -0.4 1,250,162 - Atu4130 0.63 -0.3 1,250,189 + Atu4130 0.64 +0.0 1,250,246 + Atu4130 0.67 +1.0 1,250,254 - Atu4130 0.68 +0.0 1,250,291 + Atu4130 0.70 -0.4 1,250,348 - Atu4130 0.73 +0.2 1,250,435 - Atu4130 0.77 +1.6 1,250,455 + Atu4130 0.78 -1.8 1,250,507 - Atu4130 0.81 -0.3 1,250,573 - Atu4130 0.84 -0.3 1,250,601 - Atu4130 0.85 +0.2 1,250,820 - -0.6 1,250,878 + +0.1 1,250,886 - -1.7 1,250,922 + -2.9 1,251,025 + Atu4131 0.17 -0.2 1,251,033 - Atu4131 0.18 -0.1 1,251,040 + Atu4131 0.19 -0.1 1,251,254 + Atu4131 0.46 +0.3 1,251,272 - Atu4131 0.49 -0.7 1,251,272 - Atu4131 0.49 -0.9 1,251,341 + Atu4131 0.58 -0.7 1,251,343 + Atu4131 0.58 -0.1 1,251,419 + Atu4131 0.67 -0.2 1,251,437 + Atu4131 0.70 -0.8 1,251,453 + Atu4131 0.72 -1.0 1,251,455 - Atu4131 0.72 +0.1 1,251,461 - Atu4131 0.73 -0.6 1,251,541 - Atu4131 0.83 +0.4 1,251,711 + -0.6 1,251,803 - -0.0 1,252,131 + Atu4132 0.32 +0.1 1,252,248 + Atu4132 0.44 +2.1 1,252,362 - Atu4132 0.55 +0.2 1,252,438 + Atu4132 0.62 +0.3 1,252,580 + Atu4132 0.75 +0.4 1,252,588 - Atu4132 0.76 +0.5 1,252,588 - Atu4132 0.76 -0.0
Or see this region's nucleotide sequence