Experiment: No phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3507 and Atu3508 are separated by 297 nucleotides Atu3508 and Atu3509 are separated by 85 nucleotides Atu3509 and Atu3510 overlap by 4 nucleotides
Atu3507: Atu3507 - hypothetical protein, at 557,462 to 558,241
Atu3507
Atu3508: Atu3508 - 3-demethylubiquinone-9 3-methyltransferase, at 558,539 to 559,291
Atu3508
Atu3509: Atu3509 - hypothetical protein, at 559,377 to 559,805
Atu3509
Atu3510: Atu3510 - amidohydrolase, at 559,802 to 560,662
Atu3510
Position (kb) 558
559
560 Strain fitness (log2 ratio) -2
-1
0
1 at 557.554 kb on + strand, within Atu3507 at 557.636 kb on + strand, within Atu3507 at 557.644 kb on - strand, within Atu3507 at 557.681 kb on + strand, within Atu3507 at 557.831 kb on - strand, within Atu3507 at 557.911 kb on + strand, within Atu3507 at 558.112 kb on - strand, within Atu3507 at 558.282 kb on + strand at 558.305 kb on + strand at 558.434 kb on - strand at 559.424 kb on - strand, within Atu3509 at 559.437 kb on + strand, within Atu3509 at 559.445 kb on - strand, within Atu3509 at 559.680 kb on - strand, within Atu3509 at 559.824 kb on + strand at 559.852 kb on - strand at 559.966 kb on - strand, within Atu3510 at 560.136 kb on + strand, within Atu3510 at 560.144 kb on - strand, within Atu3510
Per-strain Table
Position Strand Gene LocusTag Fraction No phage control remove 557,554 + Atu3507 0.12 -0.7 557,636 + Atu3507 0.22 -1.1 557,644 - Atu3507 0.23 -0.7 557,681 + Atu3507 0.28 -1.1 557,831 - Atu3507 0.47 -0.1 557,911 + Atu3507 0.58 -1.6 558,112 - Atu3507 0.83 +0.3 558,282 + +0.6 558,305 + -2.5 558,434 - +0.6 559,424 - Atu3509 0.11 +0.5 559,437 + Atu3509 0.14 +0.5 559,445 - Atu3509 0.16 -1.1 559,680 - Atu3509 0.71 +0.1 559,824 + -1.0 559,852 - +0.9 559,966 - Atu3510 0.19 -1.0 560,136 + Atu3510 0.39 -0.1 560,144 - Atu3510 0.40 -0.1
Or see this region's nucleotide sequence