Experiment: No phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0172 and Atu0173 are separated by 70 nucleotides Atu0173 and Atu0174 are separated by 85 nucleotides
Atu0172: Atu0172 - ABC transporter, membrane spanning protein (phosphonate), at 176,435 to 177,421
Atu0172
Atu0173: Atu0173 - ABC transporter, substrate binding protein (phosphonate), at 177,492 to 178,397
Atu0173
Atu0174: Atu0174 - ABC transporter, nucleotide binding/ATPase protein (phosphonate), at 178,483 to 179,343
Atu0174
Position (kb) 177
178
179 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 176.538 kb on - strand, within Atu0172 at 176.673 kb on - strand, within Atu0172 at 176.673 kb on - strand, within Atu0172 at 176.673 kb on - strand, within Atu0172 at 176.719 kb on + strand, within Atu0172 at 176.752 kb on - strand, within Atu0172 at 176.785 kb on - strand, within Atu0172 at 176.856 kb on + strand, within Atu0172 at 176.864 kb on - strand, within Atu0172 at 176.868 kb on + strand, within Atu0172 at 176.917 kb on + strand, within Atu0172 at 176.927 kb on + strand, within Atu0172 at 176.993 kb on + strand, within Atu0172 at 177.019 kb on + strand, within Atu0172 at 177.140 kb on - strand, within Atu0172 at 177.195 kb on + strand, within Atu0172 at 177.301 kb on - strand, within Atu0172 at 177.320 kb on - strand, within Atu0172 at 177.402 kb on - strand at 177.407 kb on - strand at 177.409 kb on + strand at 177.409 kb on + strand at 177.567 kb on + strand at 177.578 kb on + strand at 177.586 kb on - strand, within Atu0173 at 177.586 kb on - strand, within Atu0173 at 177.601 kb on + strand, within Atu0173 at 177.714 kb on - strand, within Atu0173 at 177.758 kb on + strand, within Atu0173 at 177.775 kb on + strand, within Atu0173 at 177.866 kb on - strand, within Atu0173 at 177.997 kb on + strand, within Atu0173 at 178.107 kb on - strand, within Atu0173 at 178.181 kb on + strand, within Atu0173 at 178.183 kb on - strand, within Atu0173 at 178.240 kb on + strand, within Atu0173 at 178.248 kb on - strand, within Atu0173 at 178.248 kb on - strand, within Atu0173 at 178.256 kb on - strand, within Atu0173 at 178.256 kb on - strand, within Atu0173 at 178.261 kb on + strand, within Atu0173 at 178.321 kb on + strand at 178.322 kb on - strand at 178.338 kb on - strand at 178.340 kb on + strand at 178.418 kb on - strand at 178.458 kb on + strand at 178.476 kb on - strand at 178.486 kb on - strand at 178.506 kb on - strand at 178.530 kb on - strand at 178.671 kb on + strand, within Atu0174 at 178.681 kb on - strand, within Atu0174 at 178.681 kb on - strand, within Atu0174 at 178.681 kb on - strand, within Atu0174 at 178.757 kb on - strand, within Atu0174 at 178.774 kb on + strand, within Atu0174 at 178.845 kb on - strand, within Atu0174 at 178.845 kb on - strand, within Atu0174 at 178.866 kb on - strand, within Atu0174 at 178.896 kb on - strand, within Atu0174 at 178.919 kb on + strand, within Atu0174 at 179.005 kb on + strand, within Atu0174 at 179.039 kb on + strand, within Atu0174 at 179.048 kb on + strand, within Atu0174 at 179.146 kb on + strand, within Atu0174 at 179.265 kb on + strand at 179.289 kb on + strand at 179.312 kb on - strand at 179.331 kb on + strand at 179.369 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction No phage control remove 176,538 - Atu0172 0.10 -0.4 176,673 - Atu0172 0.24 -1.1 176,673 - Atu0172 0.24 -1.6 176,673 - Atu0172 0.24 -0.2 176,719 + Atu0172 0.29 +1.4 176,752 - Atu0172 0.32 +0.1 176,785 - Atu0172 0.35 +0.5 176,856 + Atu0172 0.43 -0.8 176,864 - Atu0172 0.43 +0.1 176,868 + Atu0172 0.44 -2.5 176,917 + Atu0172 0.49 -0.0 176,927 + Atu0172 0.50 +0.2 176,993 + Atu0172 0.57 -0.1 177,019 + Atu0172 0.59 +0.1 177,140 - Atu0172 0.71 +0.8 177,195 + Atu0172 0.77 +0.3 177,301 - Atu0172 0.88 -2.0 177,320 - Atu0172 0.90 -1.3 177,402 - -1.0 177,407 - -1.0 177,409 + +0.1 177,409 + -1.2 177,567 + +0.4 177,578 + -1.0 177,586 - Atu0173 0.10 -1.3 177,586 - Atu0173 0.10 +0.0 177,601 + Atu0173 0.12 -0.3 177,714 - Atu0173 0.25 +0.5 177,758 + Atu0173 0.29 -0.2 177,775 + Atu0173 0.31 -0.7 177,866 - Atu0173 0.41 -1.5 177,997 + Atu0173 0.56 -1.3 178,107 - Atu0173 0.68 -3.4 178,181 + Atu0173 0.76 -1.5 178,183 - Atu0173 0.76 +0.5 178,240 + Atu0173 0.83 -1.6 178,248 - Atu0173 0.83 -0.6 178,248 - Atu0173 0.83 +0.2 178,256 - Atu0173 0.84 -0.1 178,256 - Atu0173 0.84 -0.1 178,261 + Atu0173 0.85 -0.9 178,321 + -1.1 178,322 - +0.2 178,338 - -0.1 178,340 + -0.5 178,418 - +0.3 178,458 + +0.3 178,476 - +0.7 178,486 - -0.1 178,506 - +1.1 178,530 - -1.6 178,671 + Atu0174 0.22 -1.2 178,681 - Atu0174 0.23 -1.5 178,681 - Atu0174 0.23 -1.1 178,681 - Atu0174 0.23 +0.2 178,757 - Atu0174 0.32 -1.6 178,774 + Atu0174 0.34 -0.7 178,845 - Atu0174 0.42 -0.5 178,845 - Atu0174 0.42 -0.5 178,866 - Atu0174 0.44 +0.6 178,896 - Atu0174 0.48 -0.7 178,919 + Atu0174 0.51 +0.5 179,005 + Atu0174 0.61 -1.0 179,039 + Atu0174 0.65 +0.2 179,048 + Atu0174 0.66 -0.2 179,146 + Atu0174 0.77 +0.0 179,265 + -2.4 179,289 + +0.2 179,312 - -0.3 179,331 + -1.9 179,369 + -0.5
Or see this region's nucleotide sequence