Strain Fitness in Agrobacterium fabrum C58 around Atu5199

Experiment: AgroPhage_B01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5198 and Atu5199 are separated by 129 nucleotidesAtu5199 and Atu5200 are separated by 366 nucleotides Atu5198: Atu5198 - putative oxidoreductase, at 194,086 to 195,102 Atu5198 Atu5199: Atu5199 - oxidoreductase, at 195,232 to 196,332 Atu5199 Atu5200: Atu5200 - efflux protein, at 196,699 to 198,057 Atu5200 Position (kb) 195 196 197Strain fitness (log2 ratio) -2 -1 0 1 2at 194.306 kb on - strand, within Atu5198at 194.306 kb on - strand, within Atu5198at 194.324 kb on + strand, within Atu5198at 194.332 kb on - strand, within Atu5198at 194.418 kb on - strand, within Atu5198at 194.418 kb on - strand, within Atu5198at 194.454 kb on - strand, within Atu5198at 194.456 kb on + strand, within Atu5198at 194.464 kb on - strand, within Atu5198at 194.464 kb on - strand, within Atu5198at 194.469 kb on + strand, within Atu5198at 194.477 kb on - strand, within Atu5198at 194.477 kb on - strand, within Atu5198at 194.509 kb on + strand, within Atu5198at 194.559 kb on - strand, within Atu5198at 194.612 kb on + strand, within Atu5198at 194.620 kb on - strand, within Atu5198at 194.650 kb on + strand, within Atu5198at 194.671 kb on + strand, within Atu5198at 194.718 kb on + strand, within Atu5198at 194.722 kb on - strand, within Atu5198at 194.726 kb on - strand, within Atu5198at 194.734 kb on + strand, within Atu5198at 194.734 kb on + strand, within Atu5198at 194.741 kb on - strand, within Atu5198at 194.741 kb on - strand, within Atu5198at 194.741 kb on - strand, within Atu5198at 194.742 kb on - strand, within Atu5198at 194.742 kb on - strand, within Atu5198at 194.802 kb on + strand, within Atu5198at 194.850 kb on - strand, within Atu5198at 194.873 kb on - strand, within Atu5198at 194.915 kb on + strand, within Atu5198at 194.940 kb on + strand, within Atu5198at 194.940 kb on + strand, within Atu5198at 194.940 kb on + strand, within Atu5198at 194.940 kb on + strand, within Atu5198at 194.940 kb on + strand, within Atu5198at 194.948 kb on - strand, within Atu5198at 194.948 kb on - strand, within Atu5198at 194.948 kb on - strand, within Atu5198at 194.948 kb on - strand, within Atu5198at 194.948 kb on - strand, within Atu5198at 194.963 kb on + strand, within Atu5198at 194.963 kb on + strand, within Atu5198at 194.963 kb on + strand, within Atu5198at 194.963 kb on + strand, within Atu5198at 194.963 kb on + strand, within Atu5198at 194.963 kb on + strand, within Atu5198at 194.963 kb on + strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 194.971 kb on - strand, within Atu5198at 195.085 kb on - strandat 195.164 kb on + strandat 195.239 kb on + strandat 195.269 kb on + strandat 195.317 kb on - strandat 195.357 kb on + strand, within Atu5199at 195.362 kb on + strand, within Atu5199at 195.362 kb on + strand, within Atu5199at 195.369 kb on - strand, within Atu5199at 195.370 kb on - strand, within Atu5199at 195.400 kb on + strand, within Atu5199at 195.445 kb on - strand, within Atu5199at 195.507 kb on - strand, within Atu5199at 195.529 kb on + strand, within Atu5199at 195.597 kb on - strand, within Atu5199at 195.734 kb on - strand, within Atu5199at 195.969 kb on + strand, within Atu5199at 195.974 kb on + strand, within Atu5199at 196.026 kb on - strand, within Atu5199at 196.043 kb on + strand, within Atu5199at 196.156 kb on + strand, within Atu5199at 196.156 kb on + strand, within Atu5199at 196.156 kb on + strand, within Atu5199at 196.162 kb on - strand, within Atu5199at 196.164 kb on - strand, within Atu5199at 196.164 kb on - strand, within Atu5199at 196.164 kb on - strand, within Atu5199at 196.164 kb on - strand, within Atu5199at 196.164 kb on - strand, within Atu5199at 196.264 kb on + strandat 196.295 kb on + strandat 196.303 kb on - strandat 196.340 kb on + strandat 196.379 kb on - strandat 196.445 kb on + strandat 196.453 kb on - strandat 196.603 kb on + strandat 196.617 kb on + strandat 196.659 kb on - strandat 196.659 kb on - strandat 196.792 kb on + strandat 196.832 kb on + strandat 196.832 kb on + strandat 196.852 kb on + strand, within Atu5200at 196.853 kb on - strand, within Atu5200at 196.860 kb on + strand, within Atu5200at 196.905 kb on + strand, within Atu5200at 196.905 kb on + strand, within Atu5200at 196.934 kb on + strand, within Atu5200at 196.946 kb on + strand, within Atu5200at 196.983 kb on - strand, within Atu5200at 197.126 kb on + strand, within Atu5200at 197.134 kb on - strand, within Atu5200at 197.134 kb on - strand, within Atu5200at 197.134 kb on - strand, within Atu5200at 197.134 kb on - strand, within Atu5200at 197.134 kb on - strand, within Atu5200at 197.144 kb on - strand, within Atu5200at 197.167 kb on - strand, within Atu5200at 197.266 kb on - strand, within Atu5200at 197.276 kb on + strand, within Atu5200at 197.276 kb on + strand, within Atu5200at 197.303 kb on + strand, within Atu5200

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Per-strain Table

Position Strand Gene LocusTag Fraction AgroPhage_B01
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194,306 - Atu5198 0.22 +0.1
194,306 - Atu5198 0.22 -0.3
194,324 + Atu5198 0.23 +0.6
194,332 - Atu5198 0.24 -0.0
194,418 - Atu5198 0.33 -1.6
194,418 - Atu5198 0.33 +0.3
194,454 - Atu5198 0.36 +0.5
194,456 + Atu5198 0.36 -0.6
194,464 - Atu5198 0.37 -2.4
194,464 - Atu5198 0.37 -1.0
194,469 + Atu5198 0.38 +0.3
194,477 - Atu5198 0.38 +1.0
194,477 - Atu5198 0.38 +2.0
194,509 + Atu5198 0.42 -0.2
194,559 - Atu5198 0.47 +1.0
194,612 + Atu5198 0.52 +0.4
194,620 - Atu5198 0.53 -0.4
194,650 + Atu5198 0.55 -1.9
194,671 + Atu5198 0.58 -0.7
194,718 + Atu5198 0.62 +0.5
194,722 - Atu5198 0.63 -0.2
194,726 - Atu5198 0.63 +1.3
194,734 + Atu5198 0.64 -1.3
194,734 + Atu5198 0.64 -0.3
194,741 - Atu5198 0.64 +0.5
194,741 - Atu5198 0.64 -1.1
194,741 - Atu5198 0.64 -0.2
194,742 - Atu5198 0.65 +0.6
194,742 - Atu5198 0.65 -0.1
194,802 + Atu5198 0.70 -0.9
194,850 - Atu5198 0.75 -1.6
194,873 - Atu5198 0.77 +0.8
194,915 + Atu5198 0.82 +0.5
194,940 + Atu5198 0.84 +0.2
194,940 + Atu5198 0.84 -0.2
194,940 + Atu5198 0.84 +0.6
194,940 + Atu5198 0.84 +0.3
194,940 + Atu5198 0.84 +0.6
194,948 - Atu5198 0.85 -0.3
194,948 - Atu5198 0.85 -0.7
194,948 - Atu5198 0.85 +0.0
194,948 - Atu5198 0.85 -0.3
194,948 - Atu5198 0.85 +0.2
194,963 + Atu5198 0.86 -0.7
194,963 + Atu5198 0.86 -1.1
194,963 + Atu5198 0.86 -0.0
194,963 + Atu5198 0.86 -0.3
194,963 + Atu5198 0.86 -0.2
194,963 + Atu5198 0.86 +0.3
194,963 + Atu5198 0.86 -0.6
194,971 - Atu5198 0.87 +0.4
194,971 - Atu5198 0.87 -0.9
194,971 - Atu5198 0.87 +0.3
194,971 - Atu5198 0.87 -0.2
194,971 - Atu5198 0.87 -1.5
194,971 - Atu5198 0.87 -0.7
194,971 - Atu5198 0.87 -1.5
194,971 - Atu5198 0.87 +0.6
194,971 - Atu5198 0.87 -0.7
195,085 - -2.0
195,164 + +0.1
195,239 + -0.7
195,269 + -0.2
195,317 - -0.1
195,357 + Atu5199 0.11 -0.4
195,362 + Atu5199 0.12 +0.4
195,362 + Atu5199 0.12 +0.3
195,369 - Atu5199 0.12 -2.2
195,370 - Atu5199 0.13 +0.7
195,400 + Atu5199 0.15 +0.8
195,445 - Atu5199 0.19 -0.5
195,507 - Atu5199 0.25 -0.2
195,529 + Atu5199 0.27 -1.3
195,597 - Atu5199 0.33 -0.1
195,734 - Atu5199 0.46 -0.7
195,969 + Atu5199 0.67 -0.1
195,974 + Atu5199 0.67 +0.1
196,026 - Atu5199 0.72 +0.3
196,043 + Atu5199 0.74 -0.2
196,156 + Atu5199 0.84 +0.1
196,156 + Atu5199 0.84 +0.1
196,156 + Atu5199 0.84 -0.2
196,162 - Atu5199 0.84 -0.0
196,164 - Atu5199 0.85 +0.3
196,164 - Atu5199 0.85 -0.6
196,164 - Atu5199 0.85 -0.4
196,164 - Atu5199 0.85 -0.1
196,164 - Atu5199 0.85 +0.1
196,264 + -0.6
196,295 + -0.6
196,303 - +0.3
196,340 + +0.2
196,379 - -0.1
196,445 + +0.6
196,453 - +1.3
196,603 + +1.0
196,617 + -0.3
196,659 - -2.0
196,659 - +0.4
196,792 + +2.0
196,832 + -0.2
196,832 + -0.1
196,852 + Atu5200 0.11 +0.3
196,853 - Atu5200 0.11 -0.2
196,860 + Atu5200 0.12 +0.6
196,905 + Atu5200 0.15 -0.0
196,905 + Atu5200 0.15 -0.3
196,934 + Atu5200 0.17 +0.5
196,946 + Atu5200 0.18 +0.3
196,983 - Atu5200 0.21 +0.4
197,126 + Atu5200 0.31 +0.3
197,134 - Atu5200 0.32 +0.3
197,134 - Atu5200 0.32 +0.1
197,134 - Atu5200 0.32 -0.7
197,134 - Atu5200 0.32 +0.6
197,134 - Atu5200 0.32 -0.0
197,144 - Atu5200 0.33 -0.6
197,167 - Atu5200 0.34 +1.0
197,266 - Atu5200 0.42 +1.3
197,276 + Atu5200 0.42 +0.3
197,276 + Atu5200 0.42 +0.6
197,303 + Atu5200 0.44 +0.1

Or see this region's nucleotide sequence