Strain Fitness in Agrobacterium fabrum C58 around Atu4439

Experiment: AgroPhage_B01

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu4438 and Atu4439 are separated by 194 nucleotidesAtu4439 and Atu4440 overlap by 1 nucleotidesAtu4440 and Atu4441 are separated by 53 nucleotides Atu4438: Atu4438 - oligopeptide ABC transporter substrate-binding protein, at 1,581,671 to 1,583,206 Atu4438 Atu4439: Atu4439 - oligopeptide ABC transporter permease, at 1,583,401 to 1,584,351 Atu4439 Atu4440: Atu4440 - oligopeptide ABC transporter permease, at 1,584,351 to 1,585,169 Atu4440 Atu4441: Atu4441 - amidase, at 1,585,223 to 1,586,620 Atu4441 Position (kb) 1583 1584 1585Strain fitness (log2 ratio) -1 0 1at 1583.283 kb on + strandat 1583.349 kb on + strandat 1583.359 kb on + strandat 1583.395 kb on + strandat 1585.338 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction AgroPhage_B01
remove
1,583,283 + -0.5
1,583,349 + -0.2
1,583,359 + -0.2
1,583,395 + +0.0
1,585,338 - -0.1

Or see this region's nucleotide sequence