Strain Fitness in Agrobacterium fabrum C58 around Atu3843

Experiment: AgroPhage_B01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3841 and Atu3842 overlap by 20 nucleotidesAtu3842 and Atu3843 are separated by 342 nucleotidesAtu3843 and Atu3844 are separated by 51 nucleotidesAtu3844 and Atu3845 are separated by 72 nucleotides Atu3841: Atu3841 - hypothetical protein, at 936,047 to 936,523 Atu3841 Atu3842: Atu3842 - hypothetical protein, at 936,504 to 937,094 Atu3842 Atu3843: Atu3843 - hypothetical protein, at 937,437 to 938,579 Atu3843 Atu3844: Atu3844 - hypothetical protein, at 938,631 to 939,143 Atu3844 Atu3845: Atu3845 - hypothetical protein, at 939,216 to 939,896 Atu3845 Position (kb) 937 938 939Strain fitness (log2 ratio) -2 -1 0 1at 936.506 kb on + strandat 936.507 kb on + strandat 936.594 kb on - strand, within Atu3842at 936.594 kb on - strand, within Atu3842at 936.594 kb on - strand, within Atu3842at 936.623 kb on - strand, within Atu3842at 936.768 kb on + strand, within Atu3842at 936.790 kb on - strand, within Atu3842at 936.861 kb on + strand, within Atu3842at 936.864 kb on - strand, within Atu3842at 936.926 kb on - strand, within Atu3842at 936.988 kb on + strand, within Atu3842at 936.993 kb on + strand, within Atu3842at 937.001 kb on - strand, within Atu3842at 937.063 kb on + strandat 937.089 kb on - strandat 937.105 kb on + strandat 937.148 kb on - strandat 937.148 kb on - strandat 937.160 kb on + strandat 937.170 kb on + strandat 937.237 kb on + strandat 937.256 kb on + strandat 937.256 kb on + strandat 937.256 kb on + strandat 937.256 kb on + strandat 937.256 kb on + strandat 937.264 kb on - strandat 937.264 kb on - strandat 937.573 kb on + strand, within Atu3843at 937.608 kb on - strand, within Atu3843at 937.610 kb on + strand, within Atu3843at 937.623 kb on - strand, within Atu3843at 937.631 kb on + strand, within Atu3843at 937.639 kb on - strand, within Atu3843at 937.639 kb on - strand, within Atu3843at 937.649 kb on - strand, within Atu3843at 937.652 kb on + strand, within Atu3843at 937.652 kb on + strand, within Atu3843at 937.652 kb on + strand, within Atu3843at 937.659 kb on + strand, within Atu3843at 937.660 kb on - strand, within Atu3843at 937.683 kb on - strand, within Atu3843at 937.685 kb on - strand, within Atu3843at 937.693 kb on + strand, within Atu3843at 937.693 kb on + strand, within Atu3843at 937.695 kb on + strand, within Atu3843at 937.701 kb on - strand, within Atu3843at 937.721 kb on + strand, within Atu3843at 937.721 kb on + strand, within Atu3843at 937.721 kb on + strand, within Atu3843at 937.721 kb on + strand, within Atu3843at 937.721 kb on + strand, within Atu3843at 937.729 kb on - strand, within Atu3843at 937.729 kb on - strand, within Atu3843at 937.734 kb on - strand, within Atu3843at 937.745 kb on - strand, within Atu3843at 937.824 kb on - strand, within Atu3843at 937.855 kb on + strand, within Atu3843at 937.881 kb on - strand, within Atu3843at 937.971 kb on - strand, within Atu3843at 937.971 kb on - strand, within Atu3843at 937.989 kb on + strand, within Atu3843at 937.997 kb on - strand, within Atu3843at 938.034 kb on - strand, within Atu3843at 938.039 kb on + strand, within Atu3843at 938.047 kb on - strand, within Atu3843at 938.047 kb on - strand, within Atu3843at 938.096 kb on + strand, within Atu3843at 938.104 kb on - strand, within Atu3843at 938.140 kb on - strand, within Atu3843at 938.236 kb on - strand, within Atu3843at 938.250 kb on + strand, within Atu3843at 938.312 kb on - strand, within Atu3843at 938.522 kb on - strandat 938.536 kb on + strandat 938.574 kb on + strandat 938.581 kb on - strandat 938.586 kb on + strandat 938.608 kb on - strandat 938.667 kb on + strandat 938.721 kb on + strand, within Atu3844at 938.721 kb on + strand, within Atu3844at 938.723 kb on - strand, within Atu3844at 938.728 kb on - strand, within Atu3844at 938.739 kb on + strand, within Atu3844at 938.742 kb on - strand, within Atu3844at 938.742 kb on - strand, within Atu3844at 938.747 kb on - strand, within Atu3844at 938.747 kb on - strand, within Atu3844at 938.791 kb on - strand, within Atu3844at 938.839 kb on + strand, within Atu3844at 938.985 kb on + strand, within Atu3844at 938.985 kb on + strand, within Atu3844at 939.023 kb on + strand, within Atu3844at 939.077 kb on + strand, within Atu3844at 939.154 kb on - strandat 939.215 kb on + strandat 939.226 kb on + strandat 939.226 kb on + strandat 939.266 kb on + strandat 939.266 kb on + strandat 939.268 kb on + strandat 939.268 kb on + strandat 939.369 kb on - strand, within Atu3845at 939.371 kb on + strand, within Atu3845at 939.371 kb on + strand, within Atu3845at 939.371 kb on + strand, within Atu3845at 939.379 kb on - strand, within Atu3845at 939.379 kb on - strand, within Atu3845at 939.408 kb on + strand, within Atu3845at 939.430 kb on + strand, within Atu3845at 939.469 kb on + strand, within Atu3845at 939.546 kb on - strand, within Atu3845at 939.560 kb on + strand, within Atu3845at 939.573 kb on - strand, within Atu3845at 939.578 kb on + strand, within Atu3845

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Per-strain Table

Position Strand Gene LocusTag Fraction AgroPhage_B01
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936,506 + -0.2
936,507 + +1.1
936,594 - Atu3842 0.15 -0.1
936,594 - Atu3842 0.15 -0.5
936,594 - Atu3842 0.15 -0.1
936,623 - Atu3842 0.20 +0.5
936,768 + Atu3842 0.45 +0.2
936,790 - Atu3842 0.48 +0.1
936,861 + Atu3842 0.60 -0.4
936,864 - Atu3842 0.61 -0.1
936,926 - Atu3842 0.71 -1.1
936,988 + Atu3842 0.82 +1.1
936,993 + Atu3842 0.83 -0.1
937,001 - Atu3842 0.84 +0.1
937,063 + -0.2
937,089 - -0.3
937,105 + -1.1
937,148 - -1.0
937,148 - -0.2
937,160 + +0.5
937,170 + -1.6
937,237 + -2.2
937,256 + -0.8
937,256 + -1.1
937,256 + -0.4
937,256 + -1.0
937,256 + +0.9
937,264 - +1.0
937,264 - +0.1
937,573 + Atu3843 0.12 +0.2
937,608 - Atu3843 0.15 -0.4
937,610 + Atu3843 0.15 -0.3
937,623 - Atu3843 0.16 +0.7
937,631 + Atu3843 0.17 -0.1
937,639 - Atu3843 0.18 -0.5
937,639 - Atu3843 0.18 +0.7
937,649 - Atu3843 0.19 -1.4
937,652 + Atu3843 0.19 +0.2
937,652 + Atu3843 0.19 +0.5
937,652 + Atu3843 0.19 +0.1
937,659 + Atu3843 0.19 -0.2
937,660 - Atu3843 0.20 +0.5
937,683 - Atu3843 0.22 -0.4
937,685 - Atu3843 0.22 -0.8
937,693 + Atu3843 0.22 -0.2
937,693 + Atu3843 0.22 -0.9
937,695 + Atu3843 0.23 -1.4
937,701 - Atu3843 0.23 +0.0
937,721 + Atu3843 0.25 -1.3
937,721 + Atu3843 0.25 -2.3
937,721 + Atu3843 0.25 +0.1
937,721 + Atu3843 0.25 -0.7
937,721 + Atu3843 0.25 +0.6
937,729 - Atu3843 0.26 -2.4
937,729 - Atu3843 0.26 +0.1
937,734 - Atu3843 0.26 -0.9
937,745 - Atu3843 0.27 +1.0
937,824 - Atu3843 0.34 +1.0
937,855 + Atu3843 0.37 -0.3
937,881 - Atu3843 0.39 -1.2
937,971 - Atu3843 0.47 -0.2
937,971 - Atu3843 0.47 +0.9
937,989 + Atu3843 0.48 -0.4
937,997 - Atu3843 0.49 +0.6
938,034 - Atu3843 0.52 -0.1
938,039 + Atu3843 0.53 +0.1
938,047 - Atu3843 0.53 -0.0
938,047 - Atu3843 0.53 -0.9
938,096 + Atu3843 0.58 -0.2
938,104 - Atu3843 0.58 +0.3
938,140 - Atu3843 0.62 -0.0
938,236 - Atu3843 0.70 -0.5
938,250 + Atu3843 0.71 +0.0
938,312 - Atu3843 0.77 -1.2
938,522 - +1.1
938,536 + -0.3
938,574 + -1.0
938,581 - -0.2
938,586 + +1.7
938,608 - -0.3
938,667 + -0.5
938,721 + Atu3844 0.18 -0.6
938,721 + Atu3844 0.18 +0.8
938,723 - Atu3844 0.18 -0.6
938,728 - Atu3844 0.19 -0.1
938,739 + Atu3844 0.21 +0.7
938,742 - Atu3844 0.22 +0.2
938,742 - Atu3844 0.22 -0.4
938,747 - Atu3844 0.23 +0.5
938,747 - Atu3844 0.23 +0.1
938,791 - Atu3844 0.31 +0.2
938,839 + Atu3844 0.41 +0.4
938,985 + Atu3844 0.69 -0.9
938,985 + Atu3844 0.69 -1.6
939,023 + Atu3844 0.76 +0.2
939,077 + Atu3844 0.87 +0.8
939,154 - -0.5
939,215 + -2.3
939,226 + -0.3
939,226 + +0.3
939,266 + -0.1
939,266 + +0.3
939,268 + -0.3
939,268 + -0.7
939,369 - Atu3845 0.22 +0.1
939,371 + Atu3845 0.23 -1.3
939,371 + Atu3845 0.23 -1.6
939,371 + Atu3845 0.23 +0.3
939,379 - Atu3845 0.24 +0.0
939,379 - Atu3845 0.24 -0.0
939,408 + Atu3845 0.28 -0.3
939,430 + Atu3845 0.31 +0.8
939,469 + Atu3845 0.37 +0.2
939,546 - Atu3845 0.48 +1.2
939,560 + Atu3845 0.51 -0.9
939,573 - Atu3845 0.52 +0.6
939,578 + Atu3845 0.53 +0.1

Or see this region's nucleotide sequence