Strain Fitness in Agrobacterium fabrum C58 around Atu2093

Experiment: AgroPhage_B01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2092 and Atu2093 overlap by 4 nucleotidesAtu2093 and Atu2094 overlap by 4 nucleotides Atu2092: Atu2092 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 2,055,066 to 2,056,031 Atu2092 Atu2093: Atu2093 - UDP-N-acetylmuramate-alanine ligase, at 2,056,028 to 2,057,443 Atu2093 Atu2094: Atu2094 - UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, at 2,057,440 to 2,058,576 Atu2094 Position (kb) 2056 2057 2058Strain fitness (log2 ratio) -1 0 1at 2055.063 kb on + strandat 2055.078 kb on + strandat 2055.091 kb on - strandat 2055.120 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction AgroPhage_B01
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2,055,063 + +0.0
2,055,078 + +0.2
2,055,091 - -0.9
2,055,120 - -0.6

Or see this region's nucleotide sequence