Experiment: AgroPhage_B01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0807 and Atu0808 are separated by 203 nucleotides Atu0808 and Atu0809 are separated by 12 nucleotides Atu0809 and Atu0810 overlap by 11 nucleotides Atu0810 and Atu0811 are separated by 192 nucleotides
Atu0807: Atu0807 - metallo-beta-lactamase superfamily protein, at 808,376 to 809,284
Atu0807
Atu0808: Atu0808 - tRNA-Gln, at 809,488 to 809,562
Atu0808
Atu0809: Atu0809 - hypothetical protein, at 809,575 to 809,886
Atu0809
Atu0810: Atu0810 - hypothetical protein, at 809,876 to 810,157
Atu0810
Atu0811: Atu0811 - malate:quinone oxidoreductase, at 810,350 to 811,984
Atu0811
Position (kb) 809
810
811 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 808.879 kb on + strand, within Atu0807 at 808.930 kb on - strand, within Atu0807 at 809.035 kb on + strand, within Atu0807 at 809.051 kb on + strand, within Atu0807 at 809.053 kb on - strand, within Atu0807 at 809.059 kb on - strand, within Atu0807 at 809.069 kb on + strand, within Atu0807 at 809.070 kb on - strand, within Atu0807 at 809.556 kb on + strand at 809.574 kb on - strand at 809.663 kb on + strand, within Atu0809 at 809.801 kb on + strand, within Atu0809 at 810.058 kb on + strand, within Atu0810 at 810.306 kb on + strand at 810.465 kb on + strand at 810.473 kb on - strand at 810.473 kb on - strand at 810.473 kb on - strand at 810.473 kb on - strand at 810.644 kb on - strand, within Atu0811 at 810.705 kb on + strand, within Atu0811 at 810.772 kb on + strand, within Atu0811 at 810.972 kb on + strand, within Atu0811 at 811.059 kb on + strand, within Atu0811 at 811.059 kb on + strand, within Atu0811 at 811.067 kb on - strand, within Atu0811
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_B01 remove 808,879 + Atu0807 0.55 +1.1 808,930 - Atu0807 0.61 -0.2 809,035 + Atu0807 0.72 -3.1 809,051 + Atu0807 0.74 -2.2 809,053 - Atu0807 0.74 -0.4 809,059 - Atu0807 0.75 -2.2 809,069 + Atu0807 0.76 +0.5 809,070 - Atu0807 0.76 +0.6 809,556 + -0.4 809,574 - -0.4 809,663 + Atu0809 0.28 -1.5 809,801 + Atu0809 0.72 -0.6 810,058 + Atu0810 0.65 -0.3 810,306 + +0.3 810,465 + -0.4 810,473 - +0.9 810,473 - +1.1 810,473 - -1.3 810,473 - -0.2 810,644 - Atu0811 0.18 -0.2 810,705 + Atu0811 0.22 +1.0 810,772 + Atu0811 0.26 -0.9 810,972 + Atu0811 0.38 -1.1 811,059 + Atu0811 0.43 +0.2 811,059 + Atu0811 0.43 -1.1 811,067 - Atu0811 0.44 +1.6
Or see this region's nucleotide sequence