Experiment: AgroPhage_B01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0391 and Atu0392 overlap by 4 nucleotides Atu0392 and Atu0393 overlap by 1 nucleotides Atu0393 and Atu0394 are separated by 42 nucleotides
Atu0391: Atu0391 - ABC transporter, nucleotide binding/ATPase protein, at 384,108 to 385,139
Atu0391
Atu0392: Atu0392 - ABC transporter, membrane spanning protein, at 385,136 to 386,062
Atu0392
Atu0393: Atu0393 - ABC transporter, membrane spanning protein, at 386,062 to 386,883
Atu0393
Atu0394: Atu0394 - ABC transporter, substrate binding protein (sugar), at 386,926 to 388,218
Atu0394
Position (kb) 385
386
387 Strain fitness (log2 ratio) -1
0
1
2 at 384.177 kb on + strand at 384.459 kb on + strand, within Atu0391 at 384.464 kb on + strand, within Atu0391 at 384.472 kb on - strand, within Atu0391 at 384.492 kb on - strand, within Atu0391 at 384.504 kb on + strand, within Atu0391 at 384.512 kb on - strand, within Atu0391 at 384.551 kb on + strand, within Atu0391 at 384.586 kb on - strand, within Atu0391 at 384.606 kb on + strand, within Atu0391 at 384.614 kb on - strand, within Atu0391 at 384.616 kb on + strand, within Atu0391 at 384.622 kb on + strand, within Atu0391 at 384.622 kb on + strand, within Atu0391 at 384.622 kb on + strand, within Atu0391 at 384.630 kb on - strand, within Atu0391 at 384.639 kb on + strand, within Atu0391 at 384.639 kb on + strand, within Atu0391 at 384.649 kb on + strand, within Atu0391 at 384.651 kb on + strand, within Atu0391 at 384.698 kb on - strand, within Atu0391 at 384.722 kb on + strand, within Atu0391 at 384.746 kb on + strand, within Atu0391 at 384.805 kb on - strand, within Atu0391 at 384.805 kb on - strand, within Atu0391 at 384.873 kb on - strand, within Atu0391 at 384.943 kb on - strand, within Atu0391 at 384.961 kb on + strand, within Atu0391 at 384.972 kb on - strand, within Atu0391 at 385.108 kb on + strand at 385.220 kb on + strand at 385.285 kb on - strand, within Atu0392 at 385.322 kb on - strand, within Atu0392 at 385.396 kb on + strand, within Atu0392 at 385.477 kb on - strand, within Atu0392 at 385.477 kb on - strand, within Atu0392 at 385.565 kb on + strand, within Atu0392 at 385.688 kb on + strand, within Atu0392 at 385.696 kb on - strand, within Atu0392 at 385.703 kb on + strand, within Atu0392 at 385.762 kb on + strand, within Atu0392 at 385.773 kb on - strand, within Atu0392 at 385.825 kb on + strand, within Atu0392 at 385.863 kb on + strand, within Atu0392 at 385.927 kb on + strand, within Atu0392 at 385.934 kb on - strand, within Atu0392 at 386.006 kb on + strand at 386.014 kb on - strand at 386.096 kb on + strand at 386.151 kb on - strand, within Atu0393 at 386.192 kb on + strand, within Atu0393 at 386.284 kb on - strand, within Atu0393 at 386.333 kb on + strand, within Atu0393 at 386.339 kb on - strand, within Atu0393 at 386.505 kb on - strand, within Atu0393 at 386.676 kb on - strand, within Atu0393 at 386.677 kb on + strand, within Atu0393 at 386.769 kb on + strand, within Atu0393 at 386.815 kb on + strand at 386.858 kb on + strand at 386.866 kb on - strand at 386.888 kb on + strand at 386.955 kb on - strand at 386.957 kb on + strand at 386.965 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_B01 remove 384,177 + +0.7 384,459 + Atu0391 0.34 -0.2 384,464 + Atu0391 0.34 +0.0 384,472 - Atu0391 0.35 -0.5 384,492 - Atu0391 0.37 +0.8 384,504 + Atu0391 0.38 -0.7 384,512 - Atu0391 0.39 -1.2 384,551 + Atu0391 0.43 -0.2 384,586 - Atu0391 0.46 -1.5 384,606 + Atu0391 0.48 +0.8 384,614 - Atu0391 0.49 -0.1 384,616 + Atu0391 0.49 -0.3 384,622 + Atu0391 0.50 -0.8 384,622 + Atu0391 0.50 +0.8 384,622 + Atu0391 0.50 +1.2 384,630 - Atu0391 0.51 -0.4 384,639 + Atu0391 0.51 +0.3 384,639 + Atu0391 0.51 +0.1 384,649 + Atu0391 0.52 -0.6 384,651 + Atu0391 0.53 +1.6 384,698 - Atu0391 0.57 -0.0 384,722 + Atu0391 0.59 +0.8 384,746 + Atu0391 0.62 +0.2 384,805 - Atu0391 0.68 +0.2 384,805 - Atu0391 0.68 +0.2 384,873 - Atu0391 0.74 +0.3 384,943 - Atu0391 0.81 -0.2 384,961 + Atu0391 0.83 +0.1 384,972 - Atu0391 0.84 +0.1 385,108 + +0.4 385,220 + -1.1 385,285 - Atu0392 0.16 -0.7 385,322 - Atu0392 0.20 +2.0 385,396 + Atu0392 0.28 -0.9 385,477 - Atu0392 0.37 -0.5 385,477 - Atu0392 0.37 -0.0 385,565 + Atu0392 0.46 -0.7 385,688 + Atu0392 0.60 -0.2 385,696 - Atu0392 0.60 -0.1 385,703 + Atu0392 0.61 -0.9 385,762 + Atu0392 0.68 -0.6 385,773 - Atu0392 0.69 -0.3 385,825 + Atu0392 0.74 -0.7 385,863 + Atu0392 0.78 -0.9 385,927 + Atu0392 0.85 +0.3 385,934 - Atu0392 0.86 -1.2 386,006 + +0.3 386,014 - +0.1 386,096 + +0.5 386,151 - Atu0393 0.11 +0.5 386,192 + Atu0393 0.16 -0.2 386,284 - Atu0393 0.27 -0.7 386,333 + Atu0393 0.33 +0.2 386,339 - Atu0393 0.34 -0.7 386,505 - Atu0393 0.54 -0.6 386,676 - Atu0393 0.75 -0.5 386,677 + Atu0393 0.75 -1.5 386,769 + Atu0393 0.86 -0.8 386,815 + +0.9 386,858 + +0.1 386,866 - +0.2 386,888 + -0.7 386,955 - +1.6 386,957 + -1.0 386,965 - +0.1
Or see this region's nucleotide sequence