Experiment: AgroPhage_B01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0239 and Atu0240 overlap by 26 nucleotides Atu0240 and Atu0241 are separated by 67 nucleotides Atu0241 and Atu0242 are separated by 72 nucleotides Atu0242 and Atu0243 overlap by 4 nucleotides
Atu0239: Atu0239 - transcriptional regulator, AraC family, at 238,693 to 239,589
Atu0239
Atu0240: Atu0240 - hypothetical protein, at 239,564 to 239,971
Atu0240
Atu0241: Atu0241 - GTP-binding protein LepA, at 240,039 to 241,865
Atu0241
Atu0242: Atu0242 - carbon-nitrogen hydrolase, at 241,938 to 242,807
Atu0242
Atu0243: Atu0243 - hypothetical protein, at 242,804 to 243,415
Atu0243
Position (kb) 240
241
242 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 239.051 kb on + strand, within Atu0239 at 239.099 kb on - strand, within Atu0239 at 239.194 kb on + strand, within Atu0239 at 239.223 kb on + strand, within Atu0239 at 239.231 kb on - strand, within Atu0239 at 239.235 kb on - strand, within Atu0239 at 239.461 kb on + strand, within Atu0239 at 239.461 kb on + strand, within Atu0239 at 239.464 kb on - strand, within Atu0239 at 239.509 kb on + strand at 239.512 kb on - strand at 239.660 kb on - strand, within Atu0240 at 239.761 kb on - strand, within Atu0240 at 239.820 kb on - strand, within Atu0240 at 239.820 kb on - strand, within Atu0240 at 239.952 kb on - strand at 240.010 kb on + strand at 240.018 kb on - strand at 240.018 kb on - strand at 240.454 kb on + strand, within Atu0241 at 241.960 kb on - strand at 241.982 kb on + strand at 242.111 kb on + strand, within Atu0242 at 242.154 kb on + strand, within Atu0242 at 242.162 kb on - strand, within Atu0242 at 242.282 kb on + strand, within Atu0242 at 242.287 kb on + strand, within Atu0242 at 242.348 kb on - strand, within Atu0242 at 242.465 kb on - strand, within Atu0242 at 242.535 kb on - strand, within Atu0242 at 242.569 kb on + strand, within Atu0242 at 242.576 kb on + strand, within Atu0242 at 242.622 kb on + strand, within Atu0242 at 242.756 kb on + strand at 242.761 kb on + strand at 242.761 kb on + strand at 242.764 kb on - strand at 242.764 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_B01 remove 239,051 + Atu0239 0.40 -0.6 239,099 - Atu0239 0.45 +0.0 239,194 + Atu0239 0.56 -0.1 239,223 + Atu0239 0.59 -0.9 239,231 - Atu0239 0.60 -0.4 239,235 - Atu0239 0.60 -0.5 239,461 + Atu0239 0.86 +0.8 239,461 + Atu0239 0.86 +0.0 239,464 - Atu0239 0.86 +0.1 239,509 + +1.3 239,512 - +0.0 239,660 - Atu0240 0.24 -0.3 239,761 - Atu0240 0.48 -1.0 239,820 - Atu0240 0.63 -0.8 239,820 - Atu0240 0.63 -0.3 239,952 - +0.7 240,010 + -1.0 240,018 - +0.1 240,018 - +0.4 240,454 + Atu0241 0.23 +1.1 241,960 - +0.3 241,982 + -0.7 242,111 + Atu0242 0.20 +0.3 242,154 + Atu0242 0.25 +0.0 242,162 - Atu0242 0.26 -0.0 242,282 + Atu0242 0.40 -0.3 242,287 + Atu0242 0.40 -1.5 242,348 - Atu0242 0.47 +0.8 242,465 - Atu0242 0.61 +3.4 242,535 - Atu0242 0.69 +1.0 242,569 + Atu0242 0.73 -1.3 242,576 + Atu0242 0.73 +0.1 242,622 + Atu0242 0.79 +0.1 242,756 + +0.4 242,761 + -0.8 242,761 + +0.4 242,764 - -0.1 242,764 - -2.1
Or see this region's nucleotide sequence