Strain Fitness in Agrobacterium fabrum C58 around Atu0221

Experiment: AgroPhage_B01

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu0219 and Atu0220 are separated by 34 nucleotidesAtu0220 and Atu0221 are separated by 167 nucleotidesAtu0221 and Atu0222 overlap by 4 nucleotidesAtu0222 and Atu0223 are separated by 133 nucleotides Atu0219: Atu0219 - components of type IV pilus, at 224,426 to 225,709 Atu0219 Atu0220: Atu0220 - components of type IV pilus, at 225,744 to 226,325 Atu0220 Atu0221: Atu0221 - component of type IV pilus, at 226,493 to 228,076 Atu0221 Atu0222: Atu0222 - components of type IV pilus, at 228,073 to 228,879 Atu0222 Atu0223: Atu0223 - components of type IV pilus, prepilin peptidase, at 229,013 to 229,525 Atu0223 Position (kb) 226 227 228 229Strain fitness (log2 ratio) -2 -1 0 1 2at 225.523 kb on + strand, within Atu0219at 225.531 kb on - strand, within Atu0219at 225.531 kb on - strand, within Atu0219at 225.531 kb on - strand, within Atu0219at 225.531 kb on - strand, within Atu0219at 225.533 kb on + strand, within Atu0219at 225.542 kb on + strand, within Atu0219at 225.574 kb on + strand, within Atu0219at 225.595 kb on - strandat 225.692 kb on + strandat 225.737 kb on + strandat 225.797 kb on - strandat 225.837 kb on + strand, within Atu0220at 225.906 kb on + strand, within Atu0220at 225.921 kb on + strand, within Atu0220at 225.987 kb on + strand, within Atu0220at 226.064 kb on - strand, within Atu0220at 226.223 kb on - strand, within Atu0220at 226.274 kb on + strandat 226.276 kb on + strandat 226.276 kb on + strandat 226.276 kb on + strandat 226.276 kb on + strandat 226.284 kb on - strandat 226.284 kb on - strandat 226.284 kb on - strandat 226.284 kb on - strandat 226.328 kb on - strandat 226.331 kb on + strandat 226.341 kb on + strandat 226.349 kb on - strandat 226.349 kb on - strandat 226.382 kb on + strandat 226.388 kb on + strandat 226.393 kb on + strandat 226.546 kb on - strandat 226.713 kb on - strand, within Atu0221at 226.792 kb on - strand, within Atu0221at 226.792 kb on - strand, within Atu0221at 226.865 kb on + strand, within Atu0221at 226.869 kb on - strand, within Atu0221at 226.873 kb on - strand, within Atu0221at 226.885 kb on - strand, within Atu0221at 226.964 kb on - strand, within Atu0221at 226.971 kb on + strand, within Atu0221at 226.976 kb on + strand, within Atu0221at 226.986 kb on + strand, within Atu0221at 227.019 kb on + strand, within Atu0221at 227.028 kb on - strand, within Atu0221at 227.028 kb on - strand, within Atu0221at 227.046 kb on - strand, within Atu0221at 227.169 kb on + strand, within Atu0221at 227.177 kb on - strand, within Atu0221at 227.338 kb on - strand, within Atu0221at 227.485 kb on - strand, within Atu0221at 227.569 kb on - strand, within Atu0221at 227.571 kb on - strand, within Atu0221at 227.585 kb on + strand, within Atu0221at 227.764 kb on + strand, within Atu0221at 227.781 kb on + strand, within Atu0221at 227.786 kb on + strand, within Atu0221at 227.835 kb on + strand, within Atu0221at 227.835 kb on + strand, within Atu0221at 227.874 kb on + strand, within Atu0221at 227.875 kb on + strand, within Atu0221at 227.882 kb on - strand, within Atu0221at 228.043 kb on - strandat 228.162 kb on - strand, within Atu0222at 228.164 kb on - strand, within Atu0222at 228.164 kb on - strand, within Atu0222at 228.248 kb on + strand, within Atu0222at 228.248 kb on + strand, within Atu0222at 228.248 kb on + strand, within Atu0222at 228.248 kb on + strand, within Atu0222at 228.254 kb on + strand, within Atu0222at 228.256 kb on - strand, within Atu0222at 228.334 kb on - strand, within Atu0222at 228.356 kb on - strand, within Atu0222at 228.372 kb on - strand, within Atu0222at 228.392 kb on - strand, within Atu0222at 228.428 kb on - strand, within Atu0222at 228.460 kb on + strand, within Atu0222at 228.566 kb on + strand, within Atu0222at 228.566 kb on + strand, within Atu0222at 228.566 kb on + strand, within Atu0222at 228.574 kb on - strand, within Atu0222at 228.574 kb on - strand, within Atu0222at 228.583 kb on + strand, within Atu0222at 228.585 kb on - strand, within Atu0222at 228.661 kb on - strand, within Atu0222at 228.922 kb on + strandat 229.035 kb on + strandat 229.048 kb on - strandat 229.070 kb on - strand, within Atu0223

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction AgroPhage_B01
remove
225,523 + Atu0219 0.85 -1.2
225,531 - Atu0219 0.86 -0.1
225,531 - Atu0219 0.86 -0.9
225,531 - Atu0219 0.86 +0.0
225,531 - Atu0219 0.86 -1.0
225,533 + Atu0219 0.86 -0.7
225,542 + Atu0219 0.87 -0.9
225,574 + Atu0219 0.89 -0.1
225,595 - -0.2
225,692 + +0.4
225,737 + -0.1
225,797 - +0.5
225,837 + Atu0220 0.16 -1.1
225,906 + Atu0220 0.28 -1.7
225,921 + Atu0220 0.30 -1.7
225,987 + Atu0220 0.42 -0.2
226,064 - Atu0220 0.55 -1.1
226,223 - Atu0220 0.82 +0.1
226,274 + +0.2
226,276 + -2.2
226,276 + -0.2
226,276 + -1.1
226,276 + +0.2
226,284 - +0.1
226,284 - -0.1
226,284 - +0.1
226,284 - +0.3
226,328 - +0.0
226,331 + -0.6
226,341 + +0.5
226,349 - +0.6
226,349 - +0.2
226,382 + -0.0
226,388 + -0.4
226,393 + -0.8
226,546 - -2.5
226,713 - Atu0221 0.14 -1.4
226,792 - Atu0221 0.19 +0.1
226,792 - Atu0221 0.19 +0.6
226,865 + Atu0221 0.23 -0.1
226,869 - Atu0221 0.24 +1.0
226,873 - Atu0221 0.24 -1.0
226,885 - Atu0221 0.25 -0.2
226,964 - Atu0221 0.30 +0.5
226,971 + Atu0221 0.30 -0.3
226,976 + Atu0221 0.30 -0.0
226,986 + Atu0221 0.31 -0.7
227,019 + Atu0221 0.33 -1.0
227,028 - Atu0221 0.34 +0.2
227,028 - Atu0221 0.34 -0.3
227,046 - Atu0221 0.35 -0.9
227,169 + Atu0221 0.43 -0.2
227,177 - Atu0221 0.43 -0.6
227,338 - Atu0221 0.53 -0.6
227,485 - Atu0221 0.63 +0.1
227,569 - Atu0221 0.68 -0.8
227,571 - Atu0221 0.68 +0.2
227,585 + Atu0221 0.69 +0.3
227,764 + Atu0221 0.80 +0.6
227,781 + Atu0221 0.81 -0.4
227,786 + Atu0221 0.82 +0.5
227,835 + Atu0221 0.85 -1.0
227,835 + Atu0221 0.85 -0.0
227,874 + Atu0221 0.87 -1.1
227,875 + Atu0221 0.87 +0.7
227,882 - Atu0221 0.88 +0.3
228,043 - -0.8
228,162 - Atu0222 0.11 +0.8
228,164 - Atu0222 0.11 -0.1
228,164 - Atu0222 0.11 -0.5
228,248 + Atu0222 0.22 +0.4
228,248 + Atu0222 0.22 -0.3
228,248 + Atu0222 0.22 +1.1
228,248 + Atu0222 0.22 -0.9
228,254 + Atu0222 0.22 +0.7
228,256 - Atu0222 0.23 +0.1
228,334 - Atu0222 0.32 -1.9
228,356 - Atu0222 0.35 -0.5
228,372 - Atu0222 0.37 -0.3
228,392 - Atu0222 0.40 +0.2
228,428 - Atu0222 0.44 -0.1
228,460 + Atu0222 0.48 -0.4
228,566 + Atu0222 0.61 +1.7
228,566 + Atu0222 0.61 -0.1
228,566 + Atu0222 0.61 -0.6
228,574 - Atu0222 0.62 -0.1
228,574 - Atu0222 0.62 -1.3
228,583 + Atu0222 0.63 +2.4
228,585 - Atu0222 0.63 -0.1
228,661 - Atu0222 0.73 +0.1
228,922 + +0.5
229,035 + -0.8
229,048 - +0.0
229,070 - Atu0223 0.11 +0.0

Or see this region's nucleotide sequence