Strain Fitness in Agrobacterium fabrum C58 around Atu3621

Experiment: No phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3620 and Atu3621 overlap by 11 nucleotidesAtu3621 and Atu3622 are separated by 111 nucleotides Atu3620: Atu3620 - hypothetical protein, at 673,516 to 674,541 Atu3620 Atu3621: Atu3621 - cobyrinic acid synthase, at 674,531 to 676,435 Atu3621 Atu3622: Atu3622 - cobalamin biosynthesis protein, at 676,547 to 677,536 Atu3622 Position (kb) 674 675 676 677Strain fitness (log2 ratio) -1 0 1at 673.734 kb on + strand, within Atu3620at 673.734 kb on + strand, within Atu3620at 673.742 kb on - strand, within Atu3620at 674.007 kb on - strand, within Atu3620at 674.087 kb on - strand, within Atu3620at 674.225 kb on + strand, within Atu3620at 674.265 kb on - strand, within Atu3620at 674.420 kb on - strand, within Atu3620at 674.582 kb on - strandat 674.588 kb on - strandat 675.689 kb on - strand, within Atu3621at 675.734 kb on - strand, within Atu3621at 676.431 kb on + strandat 676.431 kb on + strandat 676.477 kb on - strandat 676.593 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No phage control
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673,734 + Atu3620 0.21 -0.4
673,734 + Atu3620 0.21 +0.6
673,742 - Atu3620 0.22 -0.8
674,007 - Atu3620 0.48 +0.1
674,087 - Atu3620 0.56 -0.2
674,225 + Atu3620 0.69 -1.2
674,265 - Atu3620 0.73 -0.0
674,420 - Atu3620 0.88 -0.4
674,582 - +0.7
674,588 - -0.2
675,689 - Atu3621 0.61 -0.3
675,734 - Atu3621 0.63 -1.2
676,431 + -0.0
676,431 + +0.3
676,477 - -0.9
676,593 - -0.0

Or see this region's nucleotide sequence