Experiment: No phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3361 and Atu3362 are separated by 26 nucleotides Atu3362 and Atu3363 are separated by 78 nucleotides
Atu3361: Atu3361 - hypothetical protein, at 398,658 to 400,004
Atu3361
Atu3362: Atu3362 - monooxygenase, at 400,031 to 401,341
Atu3362
Atu3363: Atu3363 - sensory methylation accepting chemotaxis protein, at 401,420 to 403,156
Atu3363
Position (kb) 400
401
402 Strain fitness (log2 ratio) -2
-1
0
1
2 at 399.096 kb on - strand, within Atu3361 at 399.155 kb on - strand, within Atu3361 at 399.167 kb on + strand, within Atu3361 at 399.268 kb on + strand, within Atu3361 at 399.268 kb on + strand, within Atu3361 at 399.281 kb on - strand, within Atu3361 at 399.395 kb on + strand, within Atu3361 at 399.426 kb on + strand, within Atu3361 at 399.496 kb on - strand, within Atu3361 at 399.596 kb on - strand, within Atu3361 at 399.702 kb on + strand, within Atu3361 at 399.720 kb on - strand, within Atu3361 at 399.778 kb on + strand, within Atu3361 at 399.783 kb on + strand, within Atu3361 at 399.786 kb on - strand, within Atu3361 at 399.938 kb on + strand at 399.946 kb on - strand at 399.972 kb on - strand at 400.014 kb on + strand at 400.035 kb on - strand at 400.091 kb on - strand at 400.158 kb on - strand at 400.345 kb on + strand, within Atu3362 at 400.353 kb on - strand, within Atu3362 at 400.408 kb on - strand, within Atu3362 at 400.408 kb on - strand, within Atu3362 at 400.453 kb on + strand, within Atu3362 at 400.575 kb on - strand, within Atu3362 at 400.589 kb on + strand, within Atu3362 at 400.618 kb on - strand, within Atu3362 at 400.644 kb on - strand, within Atu3362 at 400.663 kb on - strand, within Atu3362 at 400.700 kb on + strand, within Atu3362 at 400.700 kb on + strand, within Atu3362 at 400.763 kb on + strand, within Atu3362 at 400.782 kb on + strand, within Atu3362 at 400.782 kb on - strand, within Atu3362 at 400.944 kb on - strand, within Atu3362 at 400.952 kb on + strand, within Atu3362 at 400.967 kb on - strand, within Atu3362 at 400.990 kb on + strand, within Atu3362 at 401.004 kb on + strand, within Atu3362 at 401.025 kb on + strand, within Atu3362 at 401.076 kb on + strand, within Atu3362 at 401.225 kb on - strand at 401.279 kb on + strand at 401.287 kb on + strand at 401.336 kb on + strand at 401.358 kb on + strand at 401.449 kb on - strand at 401.528 kb on - strand at 401.582 kb on - strand at 401.592 kb on - strand at 401.730 kb on + strand, within Atu3363 at 401.778 kb on - strand, within Atu3363 at 401.782 kb on + strand, within Atu3363 at 401.871 kb on - strand, within Atu3363 at 401.893 kb on - strand, within Atu3363 at 402.029 kb on - strand, within Atu3363 at 402.052 kb on + strand, within Atu3363 at 402.060 kb on + strand, within Atu3363 at 402.073 kb on - strand, within Atu3363 at 402.228 kb on - strand, within Atu3363 at 402.228 kb on - strand, within Atu3363 at 402.249 kb on - strand, within Atu3363
Per-strain Table
Position Strand Gene LocusTag Fraction No phage control remove 399,096 - Atu3361 0.33 -1.3 399,155 - Atu3361 0.37 -0.3 399,167 + Atu3361 0.38 -0.8 399,268 + Atu3361 0.45 -1.2 399,268 + Atu3361 0.45 -2.0 399,281 - Atu3361 0.46 +0.5 399,395 + Atu3361 0.55 +0.8 399,426 + Atu3361 0.57 -1.0 399,496 - Atu3361 0.62 -0.2 399,596 - Atu3361 0.70 -0.8 399,702 + Atu3361 0.78 -0.6 399,720 - Atu3361 0.79 -2.2 399,778 + Atu3361 0.83 +0.7 399,783 + Atu3361 0.84 -1.0 399,786 - Atu3361 0.84 +0.2 399,938 + -0.2 399,946 - -1.1 399,972 - -2.3 400,014 + -0.5 400,035 - +0.5 400,091 - -0.4 400,158 - -0.6 400,345 + Atu3362 0.24 +0.5 400,353 - Atu3362 0.25 -0.8 400,408 - Atu3362 0.29 +0.4 400,408 - Atu3362 0.29 +0.2 400,453 + Atu3362 0.32 -0.3 400,575 - Atu3362 0.41 +1.4 400,589 + Atu3362 0.43 +0.1 400,618 - Atu3362 0.45 -0.9 400,644 - Atu3362 0.47 -2.3 400,663 - Atu3362 0.48 -0.6 400,700 + Atu3362 0.51 -0.8 400,700 + Atu3362 0.51 +0.2 400,763 + Atu3362 0.56 -0.2 400,782 + Atu3362 0.57 -0.5 400,782 - Atu3362 0.57 -1.1 400,944 - Atu3362 0.70 -0.9 400,952 + Atu3362 0.70 +0.4 400,967 - Atu3362 0.71 -2.1 400,990 + Atu3362 0.73 -0.4 401,004 + Atu3362 0.74 +2.4 401,025 + Atu3362 0.76 +0.2 401,076 + Atu3362 0.80 +0.8 401,225 - -0.1 401,279 + +1.1 401,287 + -2.4 401,336 + +0.2 401,358 + -0.8 401,449 - -1.2 401,528 - -1.8 401,582 - -0.4 401,592 - +0.3 401,730 + Atu3363 0.18 -0.5 401,778 - Atu3363 0.21 -1.0 401,782 + Atu3363 0.21 +1.1 401,871 - Atu3363 0.26 +1.5 401,893 - Atu3363 0.27 -0.5 402,029 - Atu3363 0.35 +1.3 402,052 + Atu3363 0.36 +0.4 402,060 + Atu3363 0.37 +2.6 402,073 - Atu3363 0.38 -0.1 402,228 - Atu3363 0.47 +0.8 402,228 - Atu3363 0.47 +0.4 402,249 - Atu3363 0.48 +0.9
Or see this region's nucleotide sequence