Experiment: No phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu1100 and Atu1101 are separated by 5 nucleotides Atu1101 and Atu1102 are separated by 1 nucleotides Atu1102 and Atu1103 are separated by 71 nucleotides Atu1103 and Atu1104 overlap by 1 nucleotides
Atu1100: Atu1100 - hypothetical protein, at 1,089,547 to 1,090,434
Atu1100
Atu1101: Atu1101 - guanylate kinase, at 1,090,440 to 1,091,102
Atu1101
Atu1102: Atu1102 - hypothetical protein, at 1,091,104 to 1,091,727
Atu1102
Atu1103: Atu1103 - rRNA-adenine N6,N6-dimethyltransferase, at 1,091,799 to 1,092,629
Atu1103
Atu1104: Atu1104 - pyridoxal phosphate biosynthesis protein, at 1,092,629 to 1,093,651
Atu1104
Position (kb)
1091
1092 Strain fitness (log2 ratio)
-1
0
1
2 at 1090.238 kb on + strand, within Atu1100 at 1090.251 kb on - strand, within Atu1100 at 1090.256 kb on - strand, within Atu1100 at 1090.269 kb on - strand, within Atu1100 at 1091.178 kb on - strand, within Atu1102 at 1091.368 kb on - strand, within Atu1102 at 1091.421 kb on - strand, within Atu1102 at 1091.457 kb on + strand, within Atu1102 at 1091.481 kb on + strand, within Atu1102 at 1091.587 kb on + strand, within Atu1102 at 1091.742 kb on + strand at 1091.742 kb on + strand at 1091.814 kb on - strand at 1091.959 kb on - strand, within Atu1103 at 1091.988 kb on + strand, within Atu1103 at 1092.357 kb on - strand, within Atu1103 at 1092.659 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction No phage control remove 1,090,238 + Atu1100 0.78 -1.1 1,090,251 - Atu1100 0.79 -1.2 1,090,256 - Atu1100 0.80 +0.8 1,090,269 - Atu1100 0.81 +0.9 1,091,178 - Atu1102 0.12 -0.2 1,091,368 - Atu1102 0.42 +0.5 1,091,421 - Atu1102 0.51 +1.8 1,091,457 + Atu1102 0.57 -0.1 1,091,481 + Atu1102 0.60 +0.6 1,091,587 + Atu1102 0.77 +0.1 1,091,742 + -0.0 1,091,742 + -0.0 1,091,814 - +0.6 1,091,959 - Atu1103 0.19 -0.3 1,091,988 + Atu1103 0.23 +2.4 1,092,357 - Atu1103 0.67 +0.0 1,092,659 - -0.1
Or see this region's nucleotide sequence