Experiment: AgroPhage_A07
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3464 and Atu8032 are separated by 13 nucleotides Atu8032 and Atu3465 are separated by 262 nucleotides Atu3465 and Atu3466 overlap by 7 nucleotides Atu3466 and Atu3467 are separated by 29 nucleotides Atu3467 and Atu3468 overlap by 4 nucleotides
Atu3464: Atu3464 - dehydrogenase, at 511,918 to 512,709
Atu3464
Atu8032: Atu8032 - hypothetical protein, at 512,723 to 513,208
Atu8032
Atu3465: Atu3465 - metallo-beta-lactamase superfamily protein, at 513,471 to 514,766
Atu3465
Atu3466: Atu3466 - ArsR family transcriptional regulator, at 514,760 to 515,113
Atu3466
Atu3467: Atu3467 - hypothetical protein, at 515,143 to 515,517
Atu3467
Atu3468: Atu3468 - hypothetical protein, at 515,514 to 515,951
Atu3468
Position (kb) 513
514
515 Strain fitness (log2 ratio) -2
-1
0
1
2 at 512.493 kb on + strand, within Atu3464 at 512.499 kb on + strand, within Atu3464 at 512.531 kb on - strand, within Atu3464 at 512.601 kb on + strand, within Atu3464 at 512.652 kb on - strand at 512.652 kb on - strand at 512.982 kb on + strand, within Atu8032 at 512.982 kb on + strand, within Atu8032 at 512.982 kb on + strand, within Atu8032 at 513.070 kb on + strand, within Atu8032 at 513.137 kb on + strand, within Atu8032 at 513.154 kb on - strand, within Atu8032 at 513.168 kb on + strand at 513.233 kb on + strand at 513.312 kb on - strand at 513.367 kb on - strand at 513.367 kb on - strand at 513.932 kb on + strand, within Atu3465 at 513.940 kb on - strand, within Atu3465 at 514.270 kb on - strand, within Atu3465 at 514.280 kb on + strand, within Atu3465 at 514.368 kb on + strand, within Atu3465 at 514.620 kb on + strand, within Atu3465 at 514.756 kb on + strand at 514.864 kb on + strand, within Atu3466 at 514.944 kb on + strand, within Atu3466 at 515.047 kb on + strand, within Atu3466 at 515.116 kb on + strand at 515.118 kb on + strand at 515.223 kb on + strand, within Atu3467 at 515.365 kb on + strand, within Atu3467 at 515.536 kb on + strand at 515.544 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_A07 remove 512,493 + Atu3464 0.73 +0.2 512,499 + Atu3464 0.73 -0.6 512,531 - Atu3464 0.77 -2.4 512,601 + Atu3464 0.86 -0.6 512,652 - +0.6 512,652 - -0.7 512,982 + Atu8032 0.53 +0.1 512,982 + Atu8032 0.53 -0.7 512,982 + Atu8032 0.53 -1.4 513,070 + Atu8032 0.71 -2.4 513,137 + Atu8032 0.85 +1.5 513,154 - Atu8032 0.89 -1.2 513,168 + -1.5 513,233 + +0.2 513,312 - +0.1 513,367 - -0.1 513,367 - +0.2 513,932 + Atu3465 0.36 +1.2 513,940 - Atu3465 0.36 -0.7 514,270 - Atu3465 0.62 -0.4 514,280 + Atu3465 0.62 -1.4 514,368 + Atu3465 0.69 -1.4 514,620 + Atu3465 0.89 -1.4 514,756 + -1.4 514,864 + Atu3466 0.29 -0.4 514,944 + Atu3466 0.52 -2.7 515,047 + Atu3466 0.81 +0.7 515,116 + +0.6 515,118 + -1.7 515,223 + Atu3467 0.21 -0.6 515,365 + Atu3467 0.59 +1.1 515,536 + +2.7 515,544 - +1.8
Or see this region's nucleotide sequence