Experiment: AgroPhage_A07
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3462 and Atu3463 are separated by 128 nucleotides Atu3463 and Atu3464 are separated by 26 nucleotides Atu3464 and Atu8032 are separated by 13 nucleotides
Atu3462: Atu3462 - AraC family transcriptional regulator, at 509,952 to 510,935
Atu3462
Atu3463: Atu3463 - non-heme chloroperoxidase, at 511,064 to 511,891
Atu3463
Atu3464: Atu3464 - dehydrogenase, at 511,918 to 512,709
Atu3464
Atu8032: Atu8032 - hypothetical protein, at 512,723 to 513,208
Atu8032
Position (kb) 511
512 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 510.163 kb on - strand, within Atu3462 at 510.163 kb on - strand, within Atu3462 at 510.275 kb on - strand, within Atu3462 at 510.295 kb on - strand, within Atu3462 at 510.307 kb on - strand, within Atu3462 at 510.322 kb on + strand, within Atu3462 at 510.427 kb on - strand, within Atu3462 at 510.437 kb on + strand, within Atu3462 at 510.438 kb on - strand, within Atu3462 at 510.699 kb on + strand, within Atu3462 at 510.726 kb on + strand, within Atu3462 at 510.726 kb on + strand, within Atu3462 at 510.739 kb on - strand, within Atu3462 at 510.739 kb on - strand, within Atu3462 at 510.773 kb on + strand, within Atu3462 at 510.775 kb on + strand, within Atu3462 at 510.863 kb on + strand at 510.920 kb on + strand at 511.010 kb on - strand at 511.010 kb on - strand at 511.108 kb on + strand at 511.108 kb on + strand at 511.108 kb on + strand at 511.184 kb on + strand, within Atu3463 at 511.253 kb on + strand, within Atu3463 at 511.261 kb on - strand, within Atu3463 at 511.266 kb on - strand, within Atu3463 at 511.423 kb on + strand, within Atu3463 at 511.629 kb on - strand, within Atu3463 at 511.702 kb on - strand, within Atu3463 at 511.708 kb on - strand, within Atu3463 at 511.824 kb on + strand at 511.855 kb on + strand at 511.863 kb on - strand at 511.887 kb on + strand at 511.977 kb on - strand at 512.003 kb on + strand, within Atu3464 at 512.005 kb on - strand, within Atu3464 at 512.011 kb on - strand, within Atu3464 at 512.042 kb on - strand, within Atu3464 at 512.042 kb on - strand, within Atu3464 at 512.042 kb on - strand, within Atu3464 at 512.140 kb on - strand, within Atu3464 at 512.162 kb on - strand, within Atu3464 at 512.167 kb on - strand, within Atu3464 at 512.341 kb on + strand, within Atu3464 at 512.453 kb on - strand, within Atu3464 at 512.455 kb on + strand, within Atu3464 at 512.493 kb on + strand, within Atu3464 at 512.499 kb on + strand, within Atu3464 at 512.531 kb on - strand, within Atu3464 at 512.601 kb on + strand, within Atu3464 at 512.652 kb on - strand at 512.652 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_A07 remove 510,163 - Atu3462 0.21 -0.1 510,163 - Atu3462 0.21 -0.3 510,275 - Atu3462 0.33 -2.0 510,295 - Atu3462 0.35 +0.3 510,307 - Atu3462 0.36 +0.7 510,322 + Atu3462 0.38 -0.2 510,427 - Atu3462 0.48 -1.1 510,437 + Atu3462 0.49 -3.6 510,438 - Atu3462 0.49 -0.3 510,699 + Atu3462 0.76 +1.0 510,726 + Atu3462 0.79 -1.2 510,726 + Atu3462 0.79 +0.2 510,739 - Atu3462 0.80 +0.0 510,739 - Atu3462 0.80 +1.6 510,773 + Atu3462 0.83 +0.0 510,775 + Atu3462 0.84 -0.6 510,863 + -1.7 510,920 + -0.6 511,010 - +0.3 511,010 - +0.7 511,108 + -0.6 511,108 + +0.7 511,108 + -0.4 511,184 + Atu3463 0.14 -1.2 511,253 + Atu3463 0.23 -1.4 511,261 - Atu3463 0.24 -0.9 511,266 - Atu3463 0.24 -0.7 511,423 + Atu3463 0.43 -2.5 511,629 - Atu3463 0.68 +0.5 511,702 - Atu3463 0.77 +0.5 511,708 - Atu3463 0.78 -0.2 511,824 + +0.0 511,855 + +0.0 511,863 - -0.0 511,887 + -0.3 511,977 - -1.2 512,003 + Atu3464 0.11 +1.0 512,005 - Atu3464 0.11 +0.2 512,011 - Atu3464 0.12 +1.1 512,042 - Atu3464 0.16 +0.5 512,042 - Atu3464 0.16 +0.6 512,042 - Atu3464 0.16 +0.7 512,140 - Atu3464 0.28 -2.0 512,162 - Atu3464 0.31 -0.9 512,167 - Atu3464 0.31 +0.5 512,341 + Atu3464 0.53 +0.0 512,453 - Atu3464 0.68 +0.2 512,455 + Atu3464 0.68 -0.1 512,493 + Atu3464 0.73 +0.2 512,499 + Atu3464 0.73 -0.6 512,531 - Atu3464 0.77 -2.4 512,601 + Atu3464 0.86 -0.6 512,652 - +0.6 512,652 - -0.7
Or see this region's nucleotide sequence