Experiment: AgroPhage_A07
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3155 and Atu3156 are separated by 24 nucleotides Atu3156 and Atu3157 are separated by 3 nucleotides Atu3157 and Atu3158 are separated by 140 nucleotides
Atu3155: Atu3155 - LysR family transcriptional regulator, at 164,146 to 165,042
Atu3155
Atu3156: Atu3156 - ABC transporter permease, at 165,067 to 166,347
Atu3156
Atu3157: Atu3157 - ABC transporter permease, at 166,351 to 166,902
Atu3157
Atu3158: Atu3158 - ABC transporter substrate binding protein, at 167,043 to 168,038
Atu3158
Position (kb) 165
166
167 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 164.107 kb on + strand at 164.127 kb on + strand at 164.132 kb on + strand at 164.145 kb on - strand at 164.204 kb on + strand at 164.243 kb on - strand, within Atu3155 at 164.320 kb on - strand, within Atu3155 at 164.348 kb on - strand, within Atu3155 at 164.569 kb on - strand, within Atu3155 at 164.611 kb on + strand, within Atu3155 at 164.746 kb on + strand, within Atu3155 at 164.867 kb on + strand, within Atu3155 at 164.882 kb on + strand, within Atu3155 at 164.962 kb on - strand at 165.037 kb on + strand at 165.058 kb on + strand at 165.219 kb on + strand, within Atu3156 at 165.332 kb on - strand, within Atu3156 at 165.425 kb on - strand, within Atu3156 at 165.480 kb on - strand, within Atu3156 at 165.481 kb on - strand, within Atu3156 at 165.519 kb on - strand, within Atu3156 at 165.608 kb on + strand, within Atu3156 at 165.608 kb on + strand, within Atu3156 at 165.611 kb on - strand, within Atu3156 at 165.616 kb on - strand, within Atu3156 at 165.616 kb on - strand, within Atu3156 at 165.641 kb on + strand, within Atu3156 at 165.676 kb on + strand, within Atu3156 at 165.773 kb on + strand, within Atu3156 at 165.905 kb on + strand, within Atu3156 at 165.918 kb on - strand, within Atu3156 at 165.923 kb on + strand, within Atu3156 at 166.024 kb on + strand, within Atu3156 at 166.032 kb on + strand, within Atu3156 at 166.066 kb on - strand, within Atu3156 at 166.066 kb on - strand, within Atu3156 at 166.077 kb on - strand, within Atu3156 at 166.249 kb on + strand at 166.293 kb on + strand at 166.357 kb on - strand at 166.357 kb on - strand at 166.412 kb on - strand, within Atu3157 at 166.427 kb on - strand, within Atu3157 at 166.459 kb on + strand, within Atu3157 at 166.534 kb on + strand, within Atu3157 at 166.566 kb on + strand, within Atu3157 at 166.567 kb on + strand, within Atu3157 at 166.572 kb on + strand, within Atu3157 at 166.577 kb on + strand, within Atu3157 at 166.727 kb on + strand, within Atu3157 at 166.760 kb on + strand, within Atu3157 at 166.768 kb on - strand, within Atu3157 at 166.768 kb on - strand, within Atu3157 at 166.768 kb on - strand, within Atu3157 at 166.871 kb on + strand at 166.902 kb on + strand at 166.910 kb on - strand at 166.978 kb on + strand at 167.021 kb on - strand at 167.153 kb on + strand, within Atu3158 at 167.161 kb on - strand, within Atu3158 at 167.263 kb on + strand, within Atu3158 at 167.276 kb on - strand, within Atu3158 at 167.278 kb on + strand, within Atu3158
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_A07 remove 164,107 + +2.3 164,127 + -0.5 164,132 + -1.2 164,145 - +1.0 164,204 + -2.1 164,243 - Atu3155 0.11 -0.2 164,320 - Atu3155 0.19 +0.1 164,348 - Atu3155 0.23 +0.1 164,569 - Atu3155 0.47 -0.7 164,611 + Atu3155 0.52 -0.6 164,746 + Atu3155 0.67 -1.4 164,867 + Atu3155 0.80 +0.4 164,882 + Atu3155 0.82 +0.5 164,962 - +0.8 165,037 + +0.3 165,058 + +1.5 165,219 + Atu3156 0.12 +0.2 165,332 - Atu3156 0.21 +1.1 165,425 - Atu3156 0.28 +0.2 165,480 - Atu3156 0.32 +0.1 165,481 - Atu3156 0.32 -0.1 165,519 - Atu3156 0.35 -1.1 165,608 + Atu3156 0.42 -0.1 165,608 + Atu3156 0.42 -3.0 165,611 - Atu3156 0.42 +0.7 165,616 - Atu3156 0.43 +1.1 165,616 - Atu3156 0.43 +0.1 165,641 + Atu3156 0.45 +0.8 165,676 + Atu3156 0.48 -2.1 165,773 + Atu3156 0.55 -0.1 165,905 + Atu3156 0.65 -0.5 165,918 - Atu3156 0.66 -0.9 165,923 + Atu3156 0.67 +0.4 166,024 + Atu3156 0.75 -0.0 166,032 + Atu3156 0.75 -0.2 166,066 - Atu3156 0.78 -0.7 166,066 - Atu3156 0.78 -1.0 166,077 - Atu3156 0.79 -1.4 166,249 + -0.7 166,293 + -0.1 166,357 - -0.6 166,357 - +1.3 166,412 - Atu3157 0.11 +0.7 166,427 - Atu3157 0.14 +0.0 166,459 + Atu3157 0.20 +1.3 166,534 + Atu3157 0.33 +0.1 166,566 + Atu3157 0.39 +1.8 166,567 + Atu3157 0.39 -0.3 166,572 + Atu3157 0.40 -0.5 166,577 + Atu3157 0.41 +0.1 166,727 + Atu3157 0.68 +0.8 166,760 + Atu3157 0.74 -1.3 166,768 - Atu3157 0.76 -0.1 166,768 - Atu3157 0.76 +0.2 166,768 - Atu3157 0.76 -0.4 166,871 + +0.9 166,902 + -0.4 166,910 - +1.5 166,978 + -1.2 167,021 - -0.9 167,153 + Atu3158 0.11 +1.0 167,161 - Atu3158 0.12 -0.2 167,263 + Atu3158 0.22 -0.3 167,276 - Atu3158 0.23 -0.2 167,278 + Atu3158 0.24 -0.0
Or see this region's nucleotide sequence