Experiment: AgroPhage_A07
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0731 and Atu0732 are separated by 209 nucleotides Atu0732 and Atu0733 are separated by 10 nucleotides Atu0733 and Atu0734 are separated by 48 nucleotides
Atu0731: Atu0731 - divalent cation transporter, at 729,951 to 730,946
Atu0731
Atu0732: Atu0732 - acyl-CoA dehydrogenase, at 731,156 to 732,940
Atu0732
Atu0733: Atu0733 - enoyl-CoA hydratase/isomerase, at 732,951 to 733,709
Atu0733
Atu0734: Atu0734 - hypothetical protein, at 733,758 to 734,114
Atu0734
Position (kb) 731
732
733 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 730.187 kb on + strand, within Atu0731 at 730.213 kb on - strand, within Atu0731 at 730.228 kb on + strand, within Atu0731 at 730.236 kb on - strand, within Atu0731 at 730.262 kb on + strand, within Atu0731 at 730.355 kb on - strand, within Atu0731 at 730.362 kb on + strand, within Atu0731 at 730.370 kb on + strand, within Atu0731 at 730.370 kb on + strand, within Atu0731 at 730.378 kb on - strand, within Atu0731 at 730.412 kb on - strand, within Atu0731 at 730.533 kb on + strand, within Atu0731 at 730.569 kb on - strand, within Atu0731 at 730.673 kb on + strand, within Atu0731 at 730.914 kb on - strand at 730.954 kb on + strand at 730.962 kb on - strand at 730.962 kb on - strand at 730.962 kb on - strand at 731.009 kb on + strand at 731.017 kb on - strand at 731.130 kb on + strand at 731.139 kb on + strand at 731.177 kb on + strand at 731.230 kb on + strand at 731.242 kb on - strand at 731.263 kb on - strand at 731.364 kb on - strand, within Atu0732 at 731.411 kb on - strand, within Atu0732 at 731.414 kb on + strand, within Atu0732 at 731.422 kb on - strand, within Atu0732 at 731.422 kb on - strand, within Atu0732 at 731.459 kb on - strand, within Atu0732 at 731.491 kb on - strand, within Atu0732 at 731.521 kb on - strand, within Atu0732 at 731.557 kb on - strand, within Atu0732 at 731.559 kb on + strand, within Atu0732 at 731.587 kb on - strand, within Atu0732 at 731.639 kb on - strand, within Atu0732 at 731.692 kb on + strand, within Atu0732 at 731.692 kb on + strand, within Atu0732 at 731.692 kb on + strand, within Atu0732 at 731.787 kb on - strand, within Atu0732 at 731.901 kb on - strand, within Atu0732 at 732.139 kb on + strand, within Atu0732 at 732.162 kb on + strand, within Atu0732 at 732.239 kb on - strand, within Atu0732 at 732.747 kb on + strand, within Atu0732 at 732.768 kb on + strand at 732.838 kb on - strand at 732.911 kb on - strand at 732.934 kb on + strand at 732.934 kb on + strand at 732.937 kb on - strand at 732.969 kb on - strand at 732.998 kb on + strand at 732.998 kb on + strand at 732.999 kb on + strand at 733.059 kb on - strand, within Atu0733 at 733.134 kb on - strand, within Atu0733 at 733.196 kb on + strand, within Atu0733 at 733.301 kb on - strand, within Atu0733 at 733.348 kb on - strand, within Atu0733 at 733.360 kb on + strand, within Atu0733 at 733.384 kb on + strand, within Atu0733 at 733.384 kb on + strand, within Atu0733 at 733.384 kb on + strand, within Atu0733 at 733.426 kb on + strand, within Atu0733 at 733.548 kb on - strand, within Atu0733 at 733.569 kb on + strand, within Atu0733 at 733.569 kb on + strand, within Atu0733 at 733.618 kb on - strand, within Atu0733 at 733.659 kb on + strand at 733.666 kb on + strand at 733.666 kb on - strand at 733.721 kb on + strand at 733.758 kb on + strand at 733.765 kb on + strand at 733.766 kb on - strand at 733.773 kb on - strand at 733.775 kb on + strand at 733.781 kb on - strand at 733.827 kb on + strand, within Atu0734 at 733.866 kb on + strand, within Atu0734 at 733.910 kb on + strand, within Atu0734 at 733.918 kb on - strand, within Atu0734
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_A07 remove 730,187 + Atu0731 0.24 -0.1 730,213 - Atu0731 0.26 -1.6 730,228 + Atu0731 0.28 -1.3 730,236 - Atu0731 0.29 -1.6 730,262 + Atu0731 0.31 -0.8 730,355 - Atu0731 0.41 -0.0 730,362 + Atu0731 0.41 -0.1 730,370 + Atu0731 0.42 +0.0 730,370 + Atu0731 0.42 -2.0 730,378 - Atu0731 0.43 -0.5 730,412 - Atu0731 0.46 -0.6 730,533 + Atu0731 0.58 +0.6 730,569 - Atu0731 0.62 -0.5 730,673 + Atu0731 0.72 +0.8 730,914 - +0.5 730,954 + -0.6 730,962 - -0.1 730,962 - -1.4 730,962 - +0.4 731,009 + -1.4 731,017 - +1.8 731,130 + -0.6 731,139 + -0.2 731,177 + -0.4 731,230 + +2.6 731,242 - +1.1 731,263 - -0.6 731,364 - Atu0732 0.12 +1.0 731,411 - Atu0732 0.14 -1.6 731,414 + Atu0732 0.14 +0.9 731,422 - Atu0732 0.15 -0.2 731,422 - Atu0732 0.15 +2.0 731,459 - Atu0732 0.17 -0.0 731,491 - Atu0732 0.19 -0.0 731,521 - Atu0732 0.20 +0.4 731,557 - Atu0732 0.22 -1.9 731,559 + Atu0732 0.23 +0.4 731,587 - Atu0732 0.24 -1.9 731,639 - Atu0732 0.27 -0.8 731,692 + Atu0732 0.30 -1.2 731,692 + Atu0732 0.30 +0.9 731,692 + Atu0732 0.30 -0.4 731,787 - Atu0732 0.35 -2.4 731,901 - Atu0732 0.42 +0.5 732,139 + Atu0732 0.55 -3.2 732,162 + Atu0732 0.56 -0.4 732,239 - Atu0732 0.61 +1.4 732,747 + Atu0732 0.89 -1.3 732,768 + +0.3 732,838 - -1.1 732,911 - +0.1 732,934 + -0.0 732,934 + +0.1 732,937 - -0.2 732,969 - -1.0 732,998 + +0.5 732,998 + -0.4 732,999 + +0.1 733,059 - Atu0733 0.14 +0.1 733,134 - Atu0733 0.24 +0.7 733,196 + Atu0733 0.32 +0.8 733,301 - Atu0733 0.46 +0.2 733,348 - Atu0733 0.52 +1.0 733,360 + Atu0733 0.54 +0.1 733,384 + Atu0733 0.57 -0.5 733,384 + Atu0733 0.57 +0.3 733,384 + Atu0733 0.57 -0.0 733,426 + Atu0733 0.63 -2.4 733,548 - Atu0733 0.79 -0.1 733,569 + Atu0733 0.81 -0.2 733,569 + Atu0733 0.81 +1.3 733,618 - Atu0733 0.88 +0.7 733,659 + +0.2 733,666 + +0.9 733,666 - -2.0 733,721 + -1.3 733,758 + +0.7 733,765 + +0.8 733,766 - +0.3 733,773 - -1.2 733,775 + +0.5 733,781 - -2.6 733,827 + Atu0734 0.19 -1.1 733,866 + Atu0734 0.30 -0.0 733,910 + Atu0734 0.43 +0.3 733,918 - Atu0734 0.45 -0.3
Or see this region's nucleotide sequence