Experiment: AgroPhage_A07
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0374 and Atu0375 are separated by 205 nucleotides Atu0375 and Atu0376 are separated by 56 nucleotides Atu0376 and Atu0377 are separated by 42 nucleotides
Atu0374: Atu0374 - inosine-uridine preferring nucleoside hydrolase, at 369,370 to 370,314
Atu0374
Atu0375: Atu0375 - small heat shock protein, at 370,520 to 370,945
Atu0375
Atu0376: Atu0376 - hypothetical protein, at 371,002 to 371,259
Atu0376
Atu0377: Atu0377 - hypothetical protein, at 371,302 to 371,898
Atu0377
Position (kb) 370
371 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 369.554 kb on - strand, within Atu0374 at 369.559 kb on - strand, within Atu0374 at 369.663 kb on - strand, within Atu0374 at 369.853 kb on + strand, within Atu0374 at 369.893 kb on + strand, within Atu0374 at 369.901 kb on - strand, within Atu0374 at 369.901 kb on - strand, within Atu0374 at 369.901 kb on - strand, within Atu0374 at 369.903 kb on + strand, within Atu0374 at 369.914 kb on + strand, within Atu0374 at 369.932 kb on + strand, within Atu0374 at 369.940 kb on + strand, within Atu0374 at 369.942 kb on + strand, within Atu0374 at 369.950 kb on - strand, within Atu0374 at 369.950 kb on - strand, within Atu0374 at 370.050 kb on - strand, within Atu0374 at 370.060 kb on - strand, within Atu0374 at 370.162 kb on - strand, within Atu0374 at 370.235 kb on - strand at 370.275 kb on - strand at 370.315 kb on + strand at 370.325 kb on + strand at 370.327 kb on + strand at 370.384 kb on + strand at 370.390 kb on + strand at 370.609 kb on - strand, within Atu0375 at 370.677 kb on + strand, within Atu0375 at 370.954 kb on - strand at 371.251 kb on - strand at 371.261 kb on - strand at 371.410 kb on - strand, within Atu0377 at 371.413 kb on - strand, within Atu0377 at 371.464 kb on - strand, within Atu0377 at 371.481 kb on - strand, within Atu0377 at 371.745 kb on + strand, within Atu0377 at 371.850 kb on + strand at 371.870 kb on - strand at 371.940 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_A07 remove 369,554 - Atu0374 0.19 -0.1 369,559 - Atu0374 0.20 +0.4 369,663 - Atu0374 0.31 -0.3 369,853 + Atu0374 0.51 +0.1 369,893 + Atu0374 0.55 -0.0 369,901 - Atu0374 0.56 +0.3 369,901 - Atu0374 0.56 -0.6 369,901 - Atu0374 0.56 +1.1 369,903 + Atu0374 0.56 +1.8 369,914 + Atu0374 0.58 +0.6 369,932 + Atu0374 0.59 +0.7 369,940 + Atu0374 0.60 -1.8 369,942 + Atu0374 0.61 -3.1 369,950 - Atu0374 0.61 +0.3 369,950 - Atu0374 0.61 +0.1 370,050 - Atu0374 0.72 +0.8 370,060 - Atu0374 0.73 +0.9 370,162 - Atu0374 0.84 -0.4 370,235 - -0.0 370,275 - -2.6 370,315 + -0.7 370,325 + -0.0 370,327 + +0.5 370,384 + +0.4 370,390 + -0.1 370,609 - Atu0375 0.21 +0.3 370,677 + Atu0375 0.37 +1.3 370,954 - +1.0 371,251 - -0.8 371,261 - -2.0 371,410 - Atu0377 0.18 +0.6 371,413 - Atu0377 0.19 -1.5 371,464 - Atu0377 0.27 +0.4 371,481 - Atu0377 0.30 +0.3 371,745 + Atu0377 0.74 +0.2 371,850 + +0.3 371,870 - -0.5 371,940 + -0.1
Or see this region's nucleotide sequence