Experiment: AgroPhage_A07
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0266 and Atu0267 overlap by 4 nucleotides Atu0267 and Atu0268 are separated by 11 nucleotides Atu0268 and Atu0269 are separated by 189 nucleotides
Atu0266: Atu0266 - oxidoreductase, at 263,264 to 264,247
Atu0266
Atu0267: Atu0267 - hypothetical protein, at 264,244 to 264,597
Atu0267
Atu0268: Atu0268 - hypothetical protein, at 264,609 to 264,851
Atu0268
Atu0269: Atu0269 - exodeoxyribonuclease VII large subunit, at 265,041 to 266,639
Atu0269
Position (kb) 264
265 Strain fitness (log2 ratio) -2
-1
0
1
2 at 263.373 kb on + strand, within Atu0266 at 263.411 kb on + strand, within Atu0266 at 263.445 kb on + strand, within Atu0266 at 263.453 kb on - strand, within Atu0266 at 263.453 kb on - strand, within Atu0266 at 263.453 kb on - strand, within Atu0266 at 263.469 kb on + strand, within Atu0266 at 263.562 kb on + strand, within Atu0266 at 263.607 kb on + strand, within Atu0266 at 263.686 kb on + strand, within Atu0266 at 263.700 kb on + strand, within Atu0266 at 263.702 kb on + strand, within Atu0266 at 263.713 kb on - strand, within Atu0266 at 263.780 kb on - strand, within Atu0266 at 263.808 kb on + strand, within Atu0266 at 263.836 kb on + strand, within Atu0266 at 263.841 kb on + strand, within Atu0266 at 263.859 kb on - strand, within Atu0266 at 263.859 kb on - strand, within Atu0266 at 263.993 kb on - strand, within Atu0266 at 264.062 kb on + strand, within Atu0266 at 264.114 kb on - strand, within Atu0266 at 264.125 kb on + strand, within Atu0266 at 264.133 kb on - strand, within Atu0266 at 264.133 kb on - strand, within Atu0266 at 264.151 kb on + strand at 264.321 kb on + strand, within Atu0267 at 264.377 kb on - strand, within Atu0267 at 264.411 kb on + strand, within Atu0267 at 264.434 kb on - strand, within Atu0267 at 264.443 kb on + strand, within Atu0267 at 264.591 kb on + strand at 264.606 kb on + strand at 264.614 kb on - strand at 264.777 kb on + strand, within Atu0268 at 264.777 kb on + strand, within Atu0268 at 264.789 kb on + strand, within Atu0268 at 264.789 kb on + strand, within Atu0268 at 264.794 kb on + strand, within Atu0268 at 264.795 kb on - strand, within Atu0268 at 264.795 kb on - strand, within Atu0268 at 264.814 kb on - strand, within Atu0268 at 264.815 kb on + strand, within Atu0268 at 264.822 kb on + strand, within Atu0268 at 264.886 kb on - strand at 264.950 kb on + strand at 265.045 kb on + strand at 265.073 kb on - strand at 265.289 kb on + strand, within Atu0269 at 265.363 kb on + strand, within Atu0269 at 265.476 kb on - strand, within Atu0269
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_A07 remove 263,373 + Atu0266 0.11 +1.2 263,411 + Atu0266 0.15 +0.2 263,445 + Atu0266 0.18 -0.4 263,453 - Atu0266 0.19 -1.7 263,453 - Atu0266 0.19 +0.0 263,453 - Atu0266 0.19 +0.0 263,469 + Atu0266 0.21 -0.1 263,562 + Atu0266 0.30 +0.1 263,607 + Atu0266 0.35 +0.1 263,686 + Atu0266 0.43 +0.5 263,700 + Atu0266 0.44 +0.5 263,702 + Atu0266 0.45 +0.3 263,713 - Atu0266 0.46 +0.3 263,780 - Atu0266 0.52 +0.7 263,808 + Atu0266 0.55 -0.4 263,836 + Atu0266 0.58 -1.1 263,841 + Atu0266 0.59 -0.4 263,859 - Atu0266 0.60 -0.7 263,859 - Atu0266 0.60 +1.0 263,993 - Atu0266 0.74 +0.3 264,062 + Atu0266 0.81 -0.2 264,114 - Atu0266 0.86 -1.4 264,125 + Atu0266 0.88 +1.1 264,133 - Atu0266 0.88 +0.1 264,133 - Atu0266 0.88 -2.4 264,151 + +1.2 264,321 + Atu0267 0.22 -0.3 264,377 - Atu0267 0.38 -2.4 264,411 + Atu0267 0.47 -0.3 264,434 - Atu0267 0.54 -0.9 264,443 + Atu0267 0.56 -1.4 264,591 + +1.3 264,606 + -1.1 264,614 - +0.3 264,777 + Atu0268 0.69 -0.3 264,777 + Atu0268 0.69 +0.4 264,789 + Atu0268 0.74 -0.0 264,789 + Atu0268 0.74 +0.7 264,794 + Atu0268 0.76 +0.2 264,795 - Atu0268 0.77 -0.4 264,795 - Atu0268 0.77 +0.1 264,814 - Atu0268 0.84 +0.0 264,815 + Atu0268 0.85 -0.5 264,822 + Atu0268 0.88 -1.3 264,886 - +1.2 264,950 + +0.5 265,045 + +1.1 265,073 - +1.9 265,289 + Atu0269 0.16 +0.7 265,363 + Atu0269 0.20 -1.8 265,476 - Atu0269 0.27 -0.9
Or see this region's nucleotide sequence