Experiment: No phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3046 and Atu3047 are separated by 11 nucleotides Atu3047 and Atu3048 are separated by 41 nucleotides Atu3048 and Atu3049 are separated by 129 nucleotides
Atu3046: Atu3046 - oxidoreductase, at 42,150 to 43,475
Atu3046
Atu3047: Atu3047 - oligopeptide ABC transporter permease, at 43,487 to 44,377
Atu3047
Atu3048: Atu3048 - oligopeptide ABC transporter permease, at 44,419 to 45,369
Atu3048
Atu3049: Atu3049 - oligopeptide ABC transporter substrate-binding protein, at 45,499 to 47,160
Atu3049
Position (kb) 44
45
46 Strain fitness (log2 ratio) -2
-1
0
1
2 at 43.540 kb on + strand at 43.600 kb on - strand, within Atu3047 at 43.608 kb on + strand, within Atu3047 at 43.895 kb on - strand, within Atu3047 at 43.895 kb on - strand, within Atu3047 at 43.912 kb on + strand, within Atu3047 at 43.996 kb on - strand, within Atu3047 at 44.013 kb on + strand, within Atu3047 at 44.013 kb on + strand, within Atu3047 at 44.013 kb on + strand, within Atu3047 at 44.103 kb on + strand, within Atu3047 at 44.103 kb on + strand, within Atu3047 at 44.140 kb on + strand, within Atu3047 at 44.148 kb on - strand, within Atu3047 at 44.423 kb on - strand at 44.482 kb on - strand at 44.492 kb on - strand at 44.563 kb on + strand, within Atu3048 at 44.563 kb on + strand, within Atu3048 at 44.568 kb on + strand, within Atu3048 at 44.568 kb on + strand, within Atu3048 at 44.571 kb on - strand, within Atu3048 at 44.578 kb on + strand, within Atu3048 at 44.578 kb on + strand, within Atu3048 at 44.586 kb on - strand, within Atu3048 at 44.586 kb on - strand, within Atu3048 at 44.609 kb on - strand, within Atu3048 at 44.650 kb on + strand, within Atu3048 at 44.655 kb on - strand, within Atu3048 at 44.956 kb on + strand, within Atu3048 at 45.009 kb on + strand, within Atu3048 at 45.017 kb on - strand, within Atu3048 at 45.017 kb on - strand, within Atu3048 at 45.136 kb on - strand, within Atu3048 at 45.190 kb on - strand, within Atu3048 at 45.369 kb on - strand at 45.370 kb on + strand at 45.401 kb on + strand at 45.409 kb on - strand at 45.409 kb on - strand at 45.474 kb on - strand at 45.495 kb on + strand at 45.553 kb on + strand at 45.576 kb on + strand at 45.576 kb on + strand at 45.576 kb on + strand at 45.584 kb on - strand at 45.662 kb on + strand at 45.662 kb on + strand at 45.662 kb on + strand at 45.662 kb on + strand at 45.804 kb on + strand, within Atu3049 at 45.805 kb on - strand, within Atu3049 at 45.812 kb on - strand, within Atu3049 at 45.812 kb on - strand, within Atu3049 at 45.812 kb on - strand, within Atu3049 at 45.939 kb on - strand, within Atu3049 at 45.939 kb on - strand, within Atu3049 at 45.949 kb on - strand, within Atu3049 at 45.949 kb on - strand, within Atu3049 at 45.991 kb on + strand, within Atu3049 at 45.999 kb on - strand, within Atu3049 at 45.999 kb on - strand, within Atu3049 at 46.095 kb on - strand, within Atu3049 at 46.171 kb on - strand, within Atu3049 at 46.256 kb on - strand, within Atu3049 at 46.334 kb on - strand, within Atu3049
Per-strain Table
Position Strand Gene LocusTag Fraction No phage control remove 43,540 + +0.3 43,600 - Atu3047 0.13 +0.4 43,608 + Atu3047 0.14 +0.6 43,895 - Atu3047 0.46 +1.3 43,895 - Atu3047 0.46 +0.8 43,912 + Atu3047 0.48 +0.3 43,996 - Atu3047 0.57 +1.2 44,013 + Atu3047 0.59 +0.2 44,013 + Atu3047 0.59 +1.5 44,013 + Atu3047 0.59 +0.0 44,103 + Atu3047 0.69 -2.5 44,103 + Atu3047 0.69 +0.4 44,140 + Atu3047 0.73 +0.2 44,148 - Atu3047 0.74 +0.5 44,423 - +0.0 44,482 - -0.4 44,492 - +0.4 44,563 + Atu3048 0.15 +0.4 44,563 + Atu3048 0.15 +1.2 44,568 + Atu3048 0.16 +0.2 44,568 + Atu3048 0.16 -0.1 44,571 - Atu3048 0.16 -0.1 44,578 + Atu3048 0.17 +2.1 44,578 + Atu3048 0.17 +1.3 44,586 - Atu3048 0.18 +0.8 44,586 - Atu3048 0.18 -0.0 44,609 - Atu3048 0.20 +0.4 44,650 + Atu3048 0.24 -0.1 44,655 - Atu3048 0.25 +2.4 44,956 + Atu3048 0.56 +0.3 45,009 + Atu3048 0.62 +0.3 45,017 - Atu3048 0.63 -0.2 45,017 - Atu3048 0.63 -0.4 45,136 - Atu3048 0.75 -0.3 45,190 - Atu3048 0.81 -0.6 45,369 - -0.2 45,370 + +0.3 45,401 + +0.2 45,409 - +0.2 45,409 - +0.6 45,474 - +1.0 45,495 + -0.3 45,553 + +0.5 45,576 + +0.2 45,576 + +0.1 45,576 + -0.7 45,584 - -0.8 45,662 + +0.2 45,662 + -0.1 45,662 + +0.8 45,662 + +0.4 45,804 + Atu3049 0.18 +0.4 45,805 - Atu3049 0.18 -1.6 45,812 - Atu3049 0.19 -1.7 45,812 - Atu3049 0.19 -1.4 45,812 - Atu3049 0.19 +2.1 45,939 - Atu3049 0.26 +1.6 45,939 - Atu3049 0.26 -1.2 45,949 - Atu3049 0.27 +1.0 45,949 - Atu3049 0.27 +0.6 45,991 + Atu3049 0.30 -0.6 45,999 - Atu3049 0.30 +0.5 45,999 - Atu3049 0.30 +1.4 46,095 - Atu3049 0.36 -0.1 46,171 - Atu3049 0.40 +0.3 46,256 - Atu3049 0.46 -1.2 46,334 - Atu3049 0.50 +0.4
Or see this region's nucleotide sequence