Experiment: No phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3027 and Atu3028 overlap by 4 nucleotides Atu3028 and Atu3029 overlap by 1 nucleotides
Atu3027: Atu3027 - dehydrogenase, at 22,325 to 23,320
Atu3027
Atu3028: Atu3028 - hypothetical protein, at 23,317 to 24,114
Atu3028
Atu3029: Atu3029 - glucarate dehydratase, at 24,114 to 25,361
Atu3029
Position (kb) 23
24
25 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 22.368 kb on + strand at 22.375 kb on + strand at 22.437 kb on + strand, within Atu3027 at 22.507 kb on + strand, within Atu3027 at 22.526 kb on - strand, within Atu3027 at 22.590 kb on + strand, within Atu3027 at 22.597 kb on - strand, within Atu3027 at 22.702 kb on + strand, within Atu3027 at 22.702 kb on + strand, within Atu3027 at 22.710 kb on - strand, within Atu3027 at 22.710 kb on - strand, within Atu3027 at 22.710 kb on - strand, within Atu3027 at 22.710 kb on - strand, within Atu3027 at 22.751 kb on + strand, within Atu3027 at 22.756 kb on + strand, within Atu3027 at 22.764 kb on - strand, within Atu3027 at 22.845 kb on + strand, within Atu3027 at 22.939 kb on + strand, within Atu3027 at 22.957 kb on - strand, within Atu3027 at 22.993 kb on - strand, within Atu3027 at 23.167 kb on + strand, within Atu3027 at 23.167 kb on + strand, within Atu3027 at 23.175 kb on - strand, within Atu3027 at 23.175 kb on - strand, within Atu3027 at 23.197 kb on - strand, within Atu3027 at 23.201 kb on + strand, within Atu3027 at 23.286 kb on - strand at 23.344 kb on + strand at 23.354 kb on + strand at 23.362 kb on - strand at 23.362 kb on - strand at 23.384 kb on + strand at 23.438 kb on + strand, within Atu3028 at 23.445 kb on + strand, within Atu3028 at 23.527 kb on + strand, within Atu3028 at 23.574 kb on + strand, within Atu3028 at 23.576 kb on - strand, within Atu3028 at 23.591 kb on + strand, within Atu3028 at 23.594 kb on + strand, within Atu3028 at 23.602 kb on - strand, within Atu3028 at 23.682 kb on + strand, within Atu3028 at 23.690 kb on - strand, within Atu3028 at 23.690 kb on - strand, within Atu3028 at 23.699 kb on + strand, within Atu3028 at 23.711 kb on + strand, within Atu3028 at 23.719 kb on - strand, within Atu3028 at 23.789 kb on + strand, within Atu3028 at 23.793 kb on + strand, within Atu3028 at 23.793 kb on + strand, within Atu3028 at 23.829 kb on - strand, within Atu3028 at 23.832 kb on - strand, within Atu3028 at 23.934 kb on + strand, within Atu3028 at 24.072 kb on + strand at 24.080 kb on - strand at 24.080 kb on - strand at 24.080 kb on - strand at 24.087 kb on - strand at 24.106 kb on + strand at 24.154 kb on + strand at 24.158 kb on - strand at 24.165 kb on + strand at 24.175 kb on + strand at 24.189 kb on - strand at 24.206 kb on - strand at 24.233 kb on + strand at 24.252 kb on - strand, within Atu3029 at 24.282 kb on + strand, within Atu3029 at 24.283 kb on - strand, within Atu3029 at 24.425 kb on + strand, within Atu3029 at 24.510 kb on + strand, within Atu3029 at 24.518 kb on - strand, within Atu3029 at 24.518 kb on - strand, within Atu3029 at 24.520 kb on + strand, within Atu3029 at 24.535 kb on - strand, within Atu3029 at 24.571 kb on - strand, within Atu3029 at 24.821 kb on - strand, within Atu3029 at 24.832 kb on + strand, within Atu3029 at 24.844 kb on + strand, within Atu3029 at 24.885 kb on - strand, within Atu3029 at 24.972 kb on + strand, within Atu3029 at 25.026 kb on + strand, within Atu3029 at 25.034 kb on - strand, within Atu3029 at 25.034 kb on - strand, within Atu3029 at 25.034 kb on - strand, within Atu3029 at 25.065 kb on - strand, within Atu3029
Per-strain Table
Position Strand Gene LocusTag Fraction No phage control remove 22,368 + +0.4 22,375 + +0.6 22,437 + Atu3027 0.11 +2.3 22,507 + Atu3027 0.18 +0.6 22,526 - Atu3027 0.20 +1.2 22,590 + Atu3027 0.27 +1.2 22,597 - Atu3027 0.27 +0.8 22,702 + Atu3027 0.38 +0.5 22,702 + Atu3027 0.38 +1.1 22,710 - Atu3027 0.39 +0.5 22,710 - Atu3027 0.39 +1.0 22,710 - Atu3027 0.39 +1.4 22,710 - Atu3027 0.39 +0.4 22,751 + Atu3027 0.43 +0.5 22,756 + Atu3027 0.43 +0.2 22,764 - Atu3027 0.44 +1.0 22,845 + Atu3027 0.52 +0.2 22,939 + Atu3027 0.62 +1.2 22,957 - Atu3027 0.63 +0.6 22,993 - Atu3027 0.67 +0.0 23,167 + Atu3027 0.85 +0.7 23,167 + Atu3027 0.85 +0.0 23,175 - Atu3027 0.85 +0.8 23,175 - Atu3027 0.85 -0.4 23,197 - Atu3027 0.88 +0.9 23,201 + Atu3027 0.88 +1.1 23,286 - +0.9 23,344 + +0.1 23,354 + +0.1 23,362 - +0.6 23,362 - +0.4 23,384 + +1.1 23,438 + Atu3028 0.15 -0.9 23,445 + Atu3028 0.16 +0.9 23,527 + Atu3028 0.26 +2.0 23,574 + Atu3028 0.32 +1.3 23,576 - Atu3028 0.32 -0.2 23,591 + Atu3028 0.34 +0.9 23,594 + Atu3028 0.35 +3.4 23,602 - Atu3028 0.36 +0.3 23,682 + Atu3028 0.46 +0.1 23,690 - Atu3028 0.47 +1.2 23,690 - Atu3028 0.47 +0.8 23,699 + Atu3028 0.48 +0.8 23,711 + Atu3028 0.49 +3.0 23,719 - Atu3028 0.50 +0.5 23,789 + Atu3028 0.59 -2.3 23,793 + Atu3028 0.60 +1.0 23,793 + Atu3028 0.60 -0.6 23,829 - Atu3028 0.64 +0.1 23,832 - Atu3028 0.65 +0.6 23,934 + Atu3028 0.77 +1.9 24,072 + +1.5 24,080 - +1.1 24,080 - +1.0 24,080 - +2.3 24,087 - +0.6 24,106 + -0.3 24,154 + -0.1 24,158 - -1.2 24,165 + +2.1 24,175 + +0.6 24,189 - +0.7 24,206 - -0.0 24,233 + +1.0 24,252 - Atu3029 0.11 +0.0 24,282 + Atu3029 0.13 -0.4 24,283 - Atu3029 0.14 +1.9 24,425 + Atu3029 0.25 -0.3 24,510 + Atu3029 0.32 +0.4 24,518 - Atu3029 0.32 -0.3 24,518 - Atu3029 0.32 +2.1 24,520 + Atu3029 0.33 +0.3 24,535 - Atu3029 0.34 +0.7 24,571 - Atu3029 0.37 +0.3 24,821 - Atu3029 0.57 -0.2 24,832 + Atu3029 0.58 +0.4 24,844 + Atu3029 0.58 +1.2 24,885 - Atu3029 0.62 +0.9 24,972 + Atu3029 0.69 -0.3 25,026 + Atu3029 0.73 +0.6 25,034 - Atu3029 0.74 +0.2 25,034 - Atu3029 0.74 -1.7 25,034 - Atu3029 0.74 +1.1 25,065 - Atu3029 0.76 -0.3
Or see this region's nucleotide sequence