Strain Fitness in Agrobacterium fabrum C58 around Atu1562

Experiment: No phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1560 and Atu1561 are separated by 23 nucleotidesAtu1561 and Atu1562 overlap by 1 nucleotidesAtu1562 and Atu1563 are separated by 82 nucleotidesAtu1563 and Atu1564 are separated by 207 nucleotides Atu1560: Atu1560 - phytoene synthase, at 1,547,108 to 1,547,953 Atu1560 Atu1561: Atu1561 - hypothetical protein, at 1,547,977 to 1,548,369 Atu1561 Atu1562: Atu1562 - protein-export membrane protein SECD, at 1,548,369 to 1,550,942 Atu1562 Atu1563: Atu1563 - preprotein tranlocase protein, at 1,551,025 to 1,551,372 Atu1563 Atu1564: Atu1564 - hypothetical protein, at 1,551,580 to 1,552,452 Atu1564 Position (kb) 1548 1549 1550 1551Strain fitness (log2 ratio) -1 0 1at 1551.432 kb on + strandat 1551.524 kb on + strandat 1551.524 kb on + strandat 1551.532 kb on - strandat 1551.638 kb on - strandat 1551.638 kb on - strandat 1551.683 kb on - strand, within Atu1564at 1551.733 kb on + strand, within Atu1564at 1551.849 kb on + strand, within Atu1564at 1551.849 kb on + strand, within Atu1564at 1551.857 kb on - strand, within Atu1564at 1551.857 kb on - strand, within Atu1564at 1551.857 kb on - strand, within Atu1564at 1551.878 kb on - strand, within Atu1564

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Per-strain Table

Position Strand Gene LocusTag Fraction No phage control
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1,551,432 + -0.5
1,551,524 + +0.7
1,551,524 + -0.3
1,551,532 - +0.2
1,551,638 - -0.2
1,551,638 - -0.2
1,551,683 - Atu1564 0.12 -1.1
1,551,733 + Atu1564 0.18 -0.6
1,551,849 + Atu1564 0.31 -0.4
1,551,849 + Atu1564 0.31 -1.7
1,551,857 - Atu1564 0.32 +0.1
1,551,857 - Atu1564 0.32 -0.1
1,551,857 - Atu1564 0.32 +0.1
1,551,878 - Atu1564 0.34 +1.5

Or see this region's nucleotide sequence