Strain Fitness in Agrobacterium fabrum C58 around Atu6116

Experiment: AgroPhage_A05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6115 and Atu6116 are separated by 62 nucleotidesAtu6116 and Atu6117 are separated by 131 nucleotides Atu6115: Atu6115 - conserved hypothetical protein, at 135,219 to 136,625 Atu6115 Atu6116: Atu6116 - conserved hypothetical protein, at 136,688 to 137,539 Atu6116 Atu6117: Atu6117 - NTP pyrophosphohydrolase, MutT family, at 137,671 to 138,156 Atu6117 Position (kb) 136 137 138Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 135.729 kb on - strand, within Atu6115at 135.732 kb on + strand, within Atu6115at 135.740 kb on + strand, within Atu6115at 135.786 kb on + strand, within Atu6115at 135.818 kb on - strand, within Atu6115at 135.836 kb on - strand, within Atu6115at 135.931 kb on + strand, within Atu6115at 135.974 kb on - strand, within Atu6115at 135.974 kb on - strand, within Atu6115at 136.053 kb on - strand, within Atu6115at 136.053 kb on - strand, within Atu6115at 136.091 kb on + strand, within Atu6115at 136.091 kb on + strand, within Atu6115at 136.091 kb on + strand, within Atu6115at 136.099 kb on - strand, within Atu6115at 136.099 kb on - strand, within Atu6115at 136.099 kb on - strand, within Atu6115at 136.106 kb on - strand, within Atu6115at 136.167 kb on - strand, within Atu6115at 136.271 kb on - strand, within Atu6115at 136.362 kb on + strand, within Atu6115at 136.425 kb on + strand, within Atu6115at 136.499 kb on - strandat 136.587 kb on - strandat 136.665 kb on - strandat 136.738 kb on + strandat 136.807 kb on + strand, within Atu6116at 136.889 kb on + strand, within Atu6116at 136.890 kb on - strand, within Atu6116at 136.897 kb on - strand, within Atu6116at 136.897 kb on - strand, within Atu6116at 136.897 kb on - strand, within Atu6116at 136.910 kb on + strand, within Atu6116at 136.910 kb on + strand, within Atu6116at 136.910 kb on + strand, within Atu6116at 136.910 kb on + strand, within Atu6116at 136.910 kb on + strand, within Atu6116at 136.917 kb on - strand, within Atu6116at 136.917 kb on - strand, within Atu6116at 136.918 kb on - strand, within Atu6116at 136.918 kb on - strand, within Atu6116at 136.943 kb on - strand, within Atu6116at 137.026 kb on + strand, within Atu6116at 137.026 kb on - strand, within Atu6116at 137.143 kb on + strand, within Atu6116at 137.161 kb on - strand, within Atu6116at 137.180 kb on + strand, within Atu6116at 137.195 kb on - strand, within Atu6116at 137.204 kb on + strand, within Atu6116at 137.204 kb on + strand, within Atu6116at 137.238 kb on - strand, within Atu6116at 137.240 kb on + strand, within Atu6116at 137.350 kb on + strand, within Atu6116at 137.352 kb on + strand, within Atu6116at 137.370 kb on - strand, within Atu6116at 137.377 kb on + strand, within Atu6116at 137.428 kb on - strand, within Atu6116at 137.480 kb on - strandat 137.584 kb on - strandat 137.586 kb on + strandat 137.586 kb on - strandat 137.586 kb on - strandat 137.586 kb on - strandat 137.601 kb on + strandat 137.610 kb on - strandat 137.617 kb on + strandat 137.801 kb on + strand, within Atu6117at 137.801 kb on + strand, within Atu6117at 137.860 kb on + strand, within Atu6117at 137.877 kb on + strand, within Atu6117at 137.890 kb on - strand, within Atu6117at 137.890 kb on - strand, within Atu6117at 137.894 kb on + strand, within Atu6117at 137.902 kb on - strand, within Atu6117at 137.907 kb on - strand, within Atu6117at 137.977 kb on + strand, within Atu6117at 138.028 kb on + strand, within Atu6117at 138.036 kb on - strand, within Atu6117at 138.036 kb on - strand, within Atu6117at 138.052 kb on + strand, within Atu6117at 138.060 kb on - strand, within Atu6117at 138.064 kb on + strand, within Atu6117at 138.064 kb on + strand, within Atu6117at 138.079 kb on - strand, within Atu6117at 138.079 kb on - strand, within Atu6117at 138.079 kb on - strand, within Atu6117at 138.085 kb on - strand, within Atu6117at 138.140 kb on - strandat 138.149 kb on + strandat 138.170 kb on - strandat 138.278 kb on - strandat 138.303 kb on + strandat 138.306 kb on + strandat 138.312 kb on - strandat 138.340 kb on + strandat 138.348 kb on - strandat 138.358 kb on - strandat 138.372 kb on - strandat 138.377 kb on - strandat 138.397 kb on - strandat 138.433 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction AgroPhage_A05
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135,729 - Atu6115 0.36 -0.1
135,732 + Atu6115 0.36 +0.1
135,740 + Atu6115 0.37 -0.5
135,786 + Atu6115 0.40 +0.3
135,818 - Atu6115 0.43 +1.2
135,836 - Atu6115 0.44 -1.2
135,931 + Atu6115 0.51 +0.2
135,974 - Atu6115 0.54 -0.1
135,974 - Atu6115 0.54 -2.6
136,053 - Atu6115 0.59 -0.2
136,053 - Atu6115 0.59 -0.2
136,091 + Atu6115 0.62 -1.3
136,091 + Atu6115 0.62 +0.9
136,091 + Atu6115 0.62 -0.8
136,099 - Atu6115 0.63 -0.2
136,099 - Atu6115 0.63 +0.0
136,099 - Atu6115 0.63 -0.7
136,106 - Atu6115 0.63 -0.8
136,167 - Atu6115 0.67 -0.3
136,271 - Atu6115 0.75 -0.4
136,362 + Atu6115 0.81 -1.6
136,425 + Atu6115 0.86 -0.0
136,499 - +0.3
136,587 - -2.3
136,665 - +0.0
136,738 + +0.2
136,807 + Atu6116 0.14 +1.1
136,889 + Atu6116 0.24 +1.0
136,890 - Atu6116 0.24 -0.0
136,897 - Atu6116 0.25 +0.1
136,897 - Atu6116 0.25 +2.2
136,897 - Atu6116 0.25 -0.5
136,910 + Atu6116 0.26 +0.1
136,910 + Atu6116 0.26 -0.1
136,910 + Atu6116 0.26 +0.3
136,910 + Atu6116 0.26 +0.6
136,910 + Atu6116 0.26 +1.2
136,917 - Atu6116 0.27 -0.6
136,917 - Atu6116 0.27 -0.1
136,918 - Atu6116 0.27 +0.9
136,918 - Atu6116 0.27 -2.5
136,943 - Atu6116 0.30 -0.4
137,026 + Atu6116 0.40 -0.7
137,026 - Atu6116 0.40 +0.8
137,143 + Atu6116 0.53 +0.1
137,161 - Atu6116 0.56 +0.0
137,180 + Atu6116 0.58 -0.2
137,195 - Atu6116 0.60 -0.9
137,204 + Atu6116 0.61 +1.3
137,204 + Atu6116 0.61 +0.6
137,238 - Atu6116 0.65 +1.7
137,240 + Atu6116 0.65 +0.8
137,350 + Atu6116 0.78 +2.1
137,352 + Atu6116 0.78 -3.0
137,370 - Atu6116 0.80 +3.5
137,377 + Atu6116 0.81 -0.1
137,428 - Atu6116 0.87 -0.5
137,480 - +0.2
137,584 - -1.8
137,586 + -0.8
137,586 - +0.6
137,586 - -0.4
137,586 - -0.5
137,601 + +0.6
137,610 - +1.8
137,617 + +0.1
137,801 + Atu6117 0.27 -0.2
137,801 + Atu6117 0.27 +0.1
137,860 + Atu6117 0.39 +0.4
137,877 + Atu6117 0.42 +0.6
137,890 - Atu6117 0.45 -0.3
137,890 - Atu6117 0.45 -0.7
137,894 + Atu6117 0.46 -0.2
137,902 - Atu6117 0.48 +0.1
137,907 - Atu6117 0.49 +0.2
137,977 + Atu6117 0.63 +0.4
138,028 + Atu6117 0.73 -0.1
138,036 - Atu6117 0.75 -0.3
138,036 - Atu6117 0.75 -3.3
138,052 + Atu6117 0.78 +0.4
138,060 - Atu6117 0.80 +0.7
138,064 + Atu6117 0.81 +0.6
138,064 + Atu6117 0.81 +0.4
138,079 - Atu6117 0.84 +0.3
138,079 - Atu6117 0.84 -0.1
138,079 - Atu6117 0.84 -0.6
138,085 - Atu6117 0.85 +1.0
138,140 - -2.4
138,149 + +0.1
138,170 - -0.3
138,278 - +0.2
138,303 + -0.3
138,306 + -0.6
138,312 - +1.5
138,340 + -0.2
138,348 - -0.1
138,358 - -0.0
138,372 - -0.6
138,377 - -2.1
138,397 - +0.4
138,433 - +1.7

Or see this region's nucleotide sequence