Strain Fitness in Escherichia coli BW25113 around b1592

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntynfH and b1591 are separated by 42 nucleotidesb1591 and b1592 are separated by 194 nucleotidesb1592 and b1593 overlap by 48 nucleotidesb1593 and dgsA are separated by 124 nucleotides b1590: ynfH - oxidoreductase, membrane subunit (NCBI), at 1,661,633 to 1,662,487 ynfH b1591: b1591 - putative oxidoreductase component (VIMSS), at 1,662,530 to 1,663,144 b1591 b1592: b1592 - putative chloride channel (VIMSS), at 1,663,339 to 1,664,595 b1592 b1593: b1593 - orf, hypothetical protein (VIMSS), at 1,664,548 to 1,665,243 b1593 b1594: dgsA - DNA-binding transcriptional repressor (NCBI), at 1,665,368 to 1,666,588 dgsA Position (kb) 1663 1664 1665Strain fitness (log2 ratio) -1 0 1 2at 1662.405 kb on + strandat 1662.482 kb on + strandat 1662.522 kb on + strandat 1662.589 kb on + strandat 1662.796 kb on + strand, within b1591at 1662.877 kb on + strand, within b1591at 1663.574 kb on + strand, within b1592at 1663.574 kb on + strand, within b1592at 1663.876 kb on - strand, within b1592at 1663.921 kb on - strand, within b1592at 1663.990 kb on - strand, within b1592at 1663.990 kb on - strand, within b1592at 1664.007 kb on + strand, within b1592at 1664.007 kb on + strand, within b1592at 1664.013 kb on + strand, within b1592at 1664.279 kb on + strand, within b1592at 1664.301 kb on + strand, within b1592at 1664.341 kb on + strand, within b1592at 1664.343 kb on - strand, within b1592at 1664.359 kb on + strand, within b1592at 1664.448 kb on + strand, within b1592at 1664.448 kb on + strand, within b1592at 1664.579 kb on - strandat 1664.586 kb on + strandat 1664.586 kb on + strandat 1664.976 kb on + strand, within b1593at 1664.983 kb on + strand, within b1593at 1664.983 kb on + strand, within b1593at 1664.991 kb on - strand, within b1593at 1664.991 kb on - strand, within b1593at 1664.991 kb on - strand, within b1593at 1665.407 kb on - strandat 1665.479 kb on - strandat 1665.479 kb on - strandat 1665.479 kb on - strandat 1665.479 kb on - strandat 1665.493 kb on - strand, within dgsA

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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1,662,405 + +0.4
1,662,482 + +0.8
1,662,522 + -0.0
1,662,589 + +0.2
1,662,796 + b1591 b1591 0.43 +0.8
1,662,877 + b1591 b1591 0.56 +0.3
1,663,574 + b1592 b1592 0.19 +0.5
1,663,574 + b1592 b1592 0.19 +1.1
1,663,876 - b1592 b1592 0.43 -0.1
1,663,921 - b1592 b1592 0.46 +0.8
1,663,990 - b1592 b1592 0.52 +0.3
1,663,990 - b1592 b1592 0.52 +0.4
1,664,007 + b1592 b1592 0.53 +0.2
1,664,007 + b1592 b1592 0.53 +0.8
1,664,013 + b1592 b1592 0.54 +1.3
1,664,279 + b1592 b1592 0.75 +0.6
1,664,301 + b1592 b1592 0.77 +1.0
1,664,341 + b1592 b1592 0.80 +0.3
1,664,343 - b1592 b1592 0.80 +0.2
1,664,359 + b1592 b1592 0.81 -0.1
1,664,448 + b1592 b1592 0.88 +0.9
1,664,448 + b1592 b1592 0.88 -0.8
1,664,579 - +0.3
1,664,586 + +0.7
1,664,586 + +0.7
1,664,976 + b1593 b1593 0.61 +0.9
1,664,983 + b1593 b1593 0.62 -0.5
1,664,983 + b1593 b1593 0.62 +2.7
1,664,991 - b1593 b1593 0.64 +0.7
1,664,991 - b1593 b1593 0.64 +0.0
1,664,991 - b1593 b1593 0.64 +0.3
1,665,407 - -1.2
1,665,479 - +0.1
1,665,479 - -0.2
1,665,479 - -1.2
1,665,479 - -0.1
1,665,493 - dgsA b1594 0.10 -0.3

Or see this region's nucleotide sequence