Strain Fitness in Pseudomonas putida KT2440 around PP_4486

Experiment: L-Isoleucine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Isoleucine (C)
5,094,982	+		PP_4484	0.68	+0.5
5,094,983	-		PP_4484	0.68	+1.3
5,094,983	-		PP_4484	0.68	+0.5
5,095,027	+		PP_4484	0.74	+0.7
5,095,027	+		PP_4484	0.74	+0.7
5,095,027	+		PP_4484	0.74	+0.0
5,095,027	+		PP_4484	0.74	+0.7
5,095,027	+		PP_4484	0.74	+1.3
5,095,028	-		PP_4484	0.75	+0.4
5,095,028	-		PP_4484	0.75	+0.5
5,095,028	-		PP_4484	0.75	+0.6
5,095,028	-		PP_4484	0.75	-0.1
5,095,033	+		PP_4484	0.75	+0.2
5,095,033	+		PP_4484	0.75	+1.0
5,095,033	+		PP_4484	0.75	-1.2
5,095,034	-		PP_4484	0.75	-0.0
5,095,034	-		PP_4484	0.75	+1.1
5,095,034	-		PP_4484	0.75	+1.5
5,095,163	-				+0.6
5,095,193	-				+1.1
5,095,205	+				+0.5
5,095,205	+				+0.6
5,095,206	-				+1.3
5,095,249	-				+0.5
5,095,249	-				+0.7
5,095,249	-				+0.6
5,095,287	+		PP_4485	0.12	+0.4
5,095,287	+		PP_4485	0.12	-0.4
5,095,287	+		PP_4485	0.12	-0.0
5,095,288	-		PP_4485	0.12	+0.6
5,095,500	+		PP_4485	0.43	+0.7
5,095,501	-		PP_4485	0.43	+0.7
5,095,569	+		PP_4485	0.53	-0.1
5,095,627	+		PP_4485	0.62	+1.5
5,095,627	+		PP_4485	0.62	+0.6
5,095,628	-		PP_4485	0.62	-0.2
5,095,628	-		PP_4485	0.62	-0.0
5,095,628	-		PP_4485	0.62	+0.1
5,095,628	-		PP_4485	0.62	-0.1
5,095,629	+		PP_4485	0.62	+1.3
5,095,629	+		PP_4485	0.62	+0.7
5,095,629	+		PP_4485	0.62	+0.8
5,095,629	+		PP_4485	0.62	+0.6
5,095,630	-		PP_4485	0.62	+1.0
5,095,630	-		PP_4485	0.62	+0.6
5,095,630	-		PP_4485	0.62	+0.8
5,095,630	-		PP_4485	0.62	+0.8
5,095,630	-		PP_4485	0.62	+0.5
5,095,683	+		PP_4485	0.70	+0.0
5,095,684	-		PP_4485	0.70	+0.9
5,095,684	-		PP_4485	0.70	+1.2
5,095,718	-		PP_4485	0.75	+0.7
5,095,737	+		PP_4485	0.78	+0.5
5,095,737	+		PP_4485	0.78	-0.5
5,095,841	+				+2.0
5,095,841	+				+0.1
5,095,842	-				+0.6
5,095,908	+				+0.9
5,095,908	+				+0.2
5,095,981	+				+0.2
5,095,981	+				-0.1
5,095,982	-				+0.5
5,095,982	-				-1.2
5,095,999	+				-1.5
5,095,999	+				+1.0
5,095,999	+				+0.8
5,095,999	+				+0.6
5,095,999	+				+0.6
5,096,000	-				+0.7
5,096,000	-				+0.4
5,096,000	-				-0.4
5,096,000	-				-0.1
5,096,000	-				+0.4
5,096,000	-				+0.8
5,096,000	-				+0.4
5,096,018	-				+0.9
5,096,018	-				-0.1
5,096,018	-				+0.9
5,096,109	+		PP_4486	0.16	+0.6
5,096,118	-		PP_4486	0.18	+0.8
5,096,123	+		PP_4486	0.18	+0.2
5,096,163	+		PP_4486	0.23	+0.7
5,096,266	+		PP_4486	0.36	+0.4
5,096,266	+		PP_4486	0.36	-0.5
5,096,267	-		PP_4486	0.37	-0.3
5,096,287	+		PP_4486	0.39	+0.1
5,096,443	+		PP_4486	0.59	+0.9
5,096,444	-		PP_4486	0.59	+0.5
5,096,444	-		PP_4486	0.59	+1.3
5,096,444	-		PP_4486	0.59	+0.8
5,096,444	-		PP_4486	0.59	+0.8
5,096,444	-		PP_4486	0.59	+0.6
5,096,446	+		PP_4486	0.59	+1.2
5,096,570	+		PP_4486	0.75	+0.1
5,096,570	+		PP_4486	0.75	+1.0
5,096,570	+		PP_4486	0.75	+0.4
5,096,570	+		PP_4486	0.75	+1.1
5,096,614	+		PP_4486	0.81	-0.9
5,096,614	+		PP_4486	0.81	+0.2
5,096,665	+		PP_4486	0.87	+0.7
5,096,666	-		PP_4486	0.87	+1.2
5,096,770	+				-0.2
5,096,770	+				+0.8
5,096,770	+				+0.9
5,096,771	-				+0.4
5,096,771	-				+0.2
5,096,792	+				+1.3
5,096,792	+				+0.9
5,096,793	-				-0.2
5,096,793	-				+0.2
5,096,793	-				+0.7
5,096,793	-				+0.1
5,096,804	-				-0.2
5,096,804	-				+0.4
5,096,804	-				-0.3
5,096,829	+				+1.0
5,096,866	+				+1.2
5,096,867	-				+0.6
5,096,892	-				-0.4
5,096,913	-				-0.3
5,096,932	+				+1.4
5,096,932	+				+0.9
5,096,932	+				+0.6
5,096,932	+				+1.1
5,096,932	+				-0.0
5,096,933	-				+0.3
5,096,933	-				+0.1
5,096,933	-				+0.5
5,096,933	-				-0.3
5,096,933	-				-0.7
5,096,933	-				+0.7
5,096,933	-				+0.1
5,096,936	+				-0.1
5,096,936	+				+0.3
5,096,937	-				-0.6
5,096,938	+				+0.8
5,096,938	+				+1.6
5,097,012	+				+1.2
5,097,012	+				+0.2
5,097,013	-				-0.2
5,097,013	-				-1.2
5,097,013	-				-1.1
5,097,013	-				+0.4
5,097,013	-				-0.1
5,097,014	+				+0.8
5,097,014	+				+0.2
5,097,015	-				+0.2
5,097,055	+				+1.0
5,097,056	-				-0.2
5,097,056	-				-0.2
5,097,170	-				-0.8
5,097,239	+				+0.3
5,097,285	+				-0.4
5,097,285	+				+0.5
5,097,285	+				+0.9
5,097,302	+				+0.5
5,097,349	+				-0.2
5,097,350	-				-0.4
5,097,578	+		PP_4487	0.13	+0.6
5,097,578	+		PP_4487	0.13	-0.1
5,097,578	+		PP_4487	0.13	+0.5
5,097,578	+		PP_4487	0.13	+0.7
5,097,578	+		PP_4487	0.13	+0.3
5,097,578	+		PP_4487	0.13	-0.2
5,097,578	+		PP_4487	0.13	-0.2
5,097,578	+		PP_4487	0.13	+0.0
5,097,579	-		PP_4487	0.13	+0.2
5,097,579	-		PP_4487	0.13	-1.1
5,097,579	-		PP_4487	0.13	-0.1
5,097,579	-		PP_4487	0.13	-0.0
5,097,579	-		PP_4487	0.13	+0.3
5,097,579	-		PP_4487	0.13	-0.6
5,097,579	-		PP_4487	0.13	-1.1
5,097,584	+		PP_4487	0.14	-0.2
5,097,584	+		PP_4487	0.14	-0.4
5,097,584	+		PP_4487	0.14	-0.1
5,097,584	+		PP_4487	0.14	-1.1
5,097,584	+		PP_4487	0.14	+0.2
5,097,584	+		PP_4487	0.14	+1.1
5,097,584	+		PP_4487	0.14	+0.4
5,097,585	-		PP_4487	0.14	-0.2
5,097,585	-		PP_4487	0.14	-0.6
5,097,585	-		PP_4487	0.14	+0.1
5,097,585	-		PP_4487	0.14	-0.9
5,097,585	-		PP_4487	0.14	+0.6
5,097,585	-		PP_4487	0.14	+0.5
5,097,585	-		PP_4487	0.14	-0.5
5,097,585	-		PP_4487	0.14	-0.8
5,097,737	+		PP_4487	0.21	-0.4