Strain Fitness in Pseudomonas putida KT2440 around PP_1033

Experiment: L-Leucine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Leucine (C)
1,178,733	+				+0.3
1,178,733	+				+0.3
1,178,734	-				-0.4
1,178,833	+				-0.1
1,178,833	+				+0.4
1,178,834	-				-0.3
1,178,834	-				-0.8
1,178,922	+				-0.3
1,178,923	-				-0.1
1,178,923	-				-0.3
1,178,926	+				-0.0
1,178,952	+				-0.8
1,178,952	+				+2.0
1,178,952	+				+0.4
1,178,953	-				+0.0
1,178,953	-				-0.2
1,178,953	-				+0.2
1,178,954	+				-0.2
1,178,954	+				-1.8
1,178,955	-				-0.6
1,178,958	+				+0.2
1,178,958	+				+0.7
1,178,958	+				-0.1
1,178,958	+				+0.1
1,178,958	+				+0.2
1,178,958	+				+0.1
1,178,958	+				-0.5
1,178,958	+				+0.0
1,178,959	-				-0.3
1,178,959	-				+0.8
1,178,959	-				+0.2
1,178,959	-				+0.3
1,178,959	-				+0.1
1,178,959	-				+0.6
1,178,959	-				-0.5
1,178,964	+				-0.2
1,179,059	+		PP_1033	0.14	-0.1
1,179,059	+		PP_1033	0.14	-0.0
1,179,060	-		PP_1033	0.14	+0.5
1,179,163	+		PP_1033	0.19	+0.8
1,179,164	-		PP_1033	0.19	+0.2
1,179,183	-		PP_1033	0.20	+0.0
1,179,183	-		PP_1033	0.20	+0.3
1,179,272	+		PP_1033	0.24	+0.5
1,179,272	+		PP_1033	0.24	-0.1
1,179,273	-		PP_1033	0.24	+0.0
1,179,273	-		PP_1033	0.24	-2.5
1,179,377	+		PP_1033	0.30	-0.8
1,179,377	+		PP_1033	0.30	-0.7
1,179,378	-		PP_1033	0.30	+0.5
1,179,402	+		PP_1033	0.31	-0.1
1,179,402	+		PP_1033	0.31	-0.3
1,179,408	+		PP_1033	0.31	-1.0
1,179,475	-		PP_1033	0.34	-0.5
1,179,520	+		PP_1033	0.37	+0.2
1,179,521	-		PP_1033	0.37	-0.5
1,179,627	+		PP_1033	0.42	+0.5
1,179,627	+		PP_1033	0.42	+0.0
1,179,627	+		PP_1033	0.42	-2.3
1,179,628	-		PP_1033	0.42	-0.3
1,179,696	-		PP_1033	0.46	+0.1
1,179,702	+		PP_1033	0.46	+0.3
1,179,702	+		PP_1033	0.46	+1.0
1,179,703	-		PP_1033	0.46	-1.0
1,179,733	-		PP_1033	0.47	+0.1
1,179,762	+		PP_1033	0.49	-0.3
1,179,792	+		PP_1033	0.50	-0.3
1,179,792	+		PP_1033	0.50	-0.2
1,179,827	-		PP_1033	0.52	-0.4
1,180,009	+		PP_1033	0.61	-0.5
1,180,058	-		PP_1033	0.64	-0.5
1,180,058	-		PP_1033	0.64	-1.3
1,180,178	+		PP_1033	0.70	-0.2
1,180,178	+		PP_1033	0.70	+0.1
1,180,201	+		PP_1033	0.71	-0.5
1,180,201	+		PP_1033	0.71	-0.7
1,180,201	+		PP_1033	0.71	+0.3
1,180,202	-		PP_1033	0.71	-0.7
1,180,202	-		PP_1033	0.71	-0.4
1,180,202	-		PP_1033	0.71	+0.1
1,180,203	+		PP_1033	0.71	+0.5
1,180,212	+		PP_1033	0.72	+0.6
1,180,212	+		PP_1033	0.72	-1.1
1,180,212	+		PP_1033	0.72	-0.0
1,180,213	-		PP_1033	0.72	-1.4
1,180,213	-		PP_1033	0.72	-0.4
1,180,249	-		PP_1033	0.73	-0.0
1,180,359	+		PP_1033	0.79	-0.9
1,180,359	+		PP_1033	0.79	-0.1
1,180,359	+		PP_1033	0.79	-1.4
1,180,359	+		PP_1033	0.79	-0.0
1,180,360	-		PP_1033	0.79	+0.4
1,180,360	-		PP_1033	0.79	+0.1
1,180,360	-		PP_1033	0.79	-1.1
1,180,360	-		PP_1033	0.79	-0.1
1,180,364	+		PP_1033	0.79	+0.4
1,180,364	+		PP_1033	0.79	+0.6
1,180,388	+		PP_1033	0.80	-0.4
1,180,394	+		PP_1033	0.81	+0.5
1,180,395	-		PP_1033	0.81	+0.0
1,180,395	-		PP_1033	0.81	+0.1
1,180,395	-		PP_1033	0.81	-0.6
1,180,461	+		PP_1033	0.84	-0.0
1,180,462	-		PP_1033	0.84	-0.8
1,180,483	+		PP_1033	0.85	-2.5
1,180,484	-		PP_1033	0.85	-0.7
1,180,506	+		PP_1033	0.86	+0.4
1,180,507	-		PP_1033	0.86	-1.9
1,180,520	+		PP_1033	0.87	-0.9
1,180,542	+		PP_1033	0.88	-0.0
1,180,542	+		PP_1033	0.88	-0.5
1,180,543	-		PP_1033	0.88	-0.3
1,180,582	-				+0.6
1,180,648	+				-0.5
1,180,648	+				-1.1
1,180,648	+				+1.2
1,180,649	-				+0.2
1,180,649	-				+0.8
1,180,649	-				+1.0
1,180,655	+				-0.9
1,180,656	-				-0.4
1,180,656	-				-0.1
1,180,682	+				+0.3
1,180,682	+				-0.0
1,180,682	+				-0.2
1,180,683	-				-0.1
1,180,683	-				-0.4
1,180,760	+				-1.0
1,180,766	+				+0.0
1,180,766	+				-0.5
1,180,886	+				-1.2
1,180,887	-				-0.1
1,180,887	-				-0.4
1,180,905	+				+0.9
1,181,027	+				-1.1
1,181,028	-				-0.3
1,181,028	-				+0.4
1,181,056	+				+0.4
1,181,057	-				+0.6
1,181,098	+		PP_1034	0.11	+0.1
1,181,098	+		PP_1034	0.11	+0.1
1,181,098	+		PP_1034	0.11	+0.7
1,181,098	+		PP_1034	0.11	-0.1
1,181,099	-		PP_1034	0.11	+0.5
1,181,306	-		PP_1034	0.25	-0.0
1,181,306	-		PP_1034	0.25	+0.5
1,181,306	-		PP_1034	0.25	+0.7
1,181,306	-		PP_1034	0.25	+0.3
1,181,377	+		PP_1034	0.30	+0.1
1,181,378	-		PP_1034	0.31	+0.3
1,181,378	-		PP_1034	0.31	-0.8
1,181,378	-		PP_1034	0.31	+0.7
1,181,378	-		PP_1034	0.31	+0.1
1,181,378	-		PP_1034	0.31	+0.0
1,181,378	-		PP_1034	0.31	+1.1
1,181,378	-		PP_1034	0.31	+0.2
1,181,383	+		PP_1034	0.31	+0.3
1,181,383	+		PP_1034	0.31	+0.6
1,181,383	+		PP_1034	0.31	+0.4
1,181,384	-		PP_1034	0.31	-1.6
1,181,384	-		PP_1034	0.31	-1.0
1,181,481	+		PP_1034	0.38	+0.2
1,181,481	+		PP_1034	0.38	-0.2
1,181,482	-		PP_1034	0.38	-1.5
1,181,663	+		PP_1034	0.51	+0.1
1,181,665	-		PP_1034	0.51	-0.0
1,181,665	-		PP_1034	0.51	+0.6
1,181,665	-		PP_1034	0.51	+1.5
1,181,674	+		PP_1034	0.52	+0.8
1,181,713	+		PP_1034	0.54	-1.2
1,181,714	-		PP_1034	0.54	+0.2
1,181,714	-		PP_1034	0.54	-1.2
1,181,714	-		PP_1034	0.54	+0.1
1,181,759	-		PP_1034	0.58	+0.7