Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0168 and PP_5431 are separated by 127 nucleotides PP_5431 and PP_0169 are separated by 198 nucleotides
PP_0168: PP_0168 - putative surface adhesion protein, at 194,495 to 220,543
_0168
PP_5431: PP_5431 - conserved protein of unknown function, at 220,671 to 221,030
_5431
PP_0169: PP_0169 - Dioxygenase, TauD/TfdA family, at 221,229 to 222,128
_0169
Position (kb) 220
221
222 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 219.679 kb on - strand at 219.715 kb on + strand at 219.759 kb on - strand at 219.759 kb on - strand at 219.788 kb on - strand at 219.862 kb on + strand at 219.863 kb on - strand at 219.930 kb on - strand at 219.947 kb on + strand at 219.947 kb on + strand at 219.988 kb on + strand at 219.989 kb on - strand at 220.007 kb on + strand at 220.007 kb on + strand at 220.007 kb on + strand at 220.022 kb on + strand at 220.022 kb on + strand at 220.036 kb on + strand at 220.112 kb on - strand at 220.138 kb on + strand at 220.139 kb on - strand at 220.298 kb on - strand at 220.349 kb on + strand at 220.349 kb on + strand at 220.474 kb on + strand at 220.475 kb on - strand at 220.602 kb on + strand at 220.603 kb on - strand at 220.603 kb on - strand at 220.642 kb on - strand at 220.654 kb on - strand at 220.654 kb on - strand at 220.695 kb on + strand at 220.696 kb on - strand at 220.696 kb on - strand at 221.090 kb on - strand at 221.327 kb on - strand, within PP_0169 at 221.327 kb on - strand, within PP_0169 at 221.372 kb on + strand, within PP_0169 at 221.423 kb on + strand, within PP_0169 at 221.423 kb on + strand, within PP_0169 at 221.423 kb on + strand, within PP_0169 at 221.424 kb on - strand, within PP_0169 at 221.470 kb on + strand, within PP_0169 at 221.470 kb on + strand, within PP_0169 at 221.471 kb on - strand, within PP_0169 at 221.471 kb on - strand, within PP_0169 at 221.602 kb on - strand, within PP_0169 at 221.602 kb on - strand, within PP_0169 at 221.687 kb on + strand, within PP_0169 at 221.687 kb on + strand, within PP_0169 at 221.688 kb on + strand, within PP_0169 at 221.688 kb on - strand, within PP_0169 at 221.688 kb on - strand, within PP_0169 at 221.688 kb on - strand, within PP_0169 at 221.704 kb on + strand, within PP_0169 at 221.754 kb on + strand, within PP_0169 at 221.755 kb on - strand, within PP_0169 at 221.755 kb on - strand, within PP_0169 at 221.757 kb on - strand, within PP_0169 at 221.964 kb on + strand, within PP_0169 at 221.964 kb on + strand, within PP_0169 at 221.965 kb on - strand, within PP_0169 at 221.965 kb on - strand, within PP_0169 at 221.965 kb on - strand, within PP_0169 at 221.994 kb on + strand, within PP_0169 at 221.995 kb on - strand, within PP_0169 at 222.016 kb on - strand, within PP_0169 at 222.016 kb on - strand, within PP_0169
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 219,679 - +1.3 219,715 + +1.6 219,759 - +0.5 219,759 - +1.8 219,788 - +3.4 219,862 + +1.3 219,863 - +1.6 219,930 - +1.1 219,947 + +1.7 219,947 + -0.2 219,988 + +0.8 219,989 - +0.8 220,007 + +2.0 220,007 + +1.7 220,007 + +1.6 220,022 + +0.7 220,022 + +0.9 220,036 + +1.1 220,112 - +1.0 220,138 + +1.2 220,139 - -0.3 220,298 - +0.8 220,349 + +0.7 220,349 + +1.5 220,474 + +1.3 220,475 - +1.4 220,602 + -0.7 220,603 - +0.6 220,603 - +0.6 220,642 - -0.3 220,654 - -0.8 220,654 - +0.3 220,695 + -1.3 220,696 - +0.4 220,696 - +0.7 221,090 - -0.6 221,327 - PP_0169 0.11 -1.4 221,327 - PP_0169 0.11 +2.0 221,372 + PP_0169 0.16 +1.2 221,423 + PP_0169 0.22 -0.5 221,423 + PP_0169 0.22 -2.0 221,423 + PP_0169 0.22 +0.5 221,424 - PP_0169 0.22 -0.1 221,470 + PP_0169 0.27 +0.1 221,470 + PP_0169 0.27 -0.6 221,471 - PP_0169 0.27 +0.3 221,471 - PP_0169 0.27 -2.2 221,602 - PP_0169 0.41 -0.1 221,602 - PP_0169 0.41 +0.0 221,687 + PP_0169 0.51 -0.2 221,687 + PP_0169 0.51 -0.3 221,688 + PP_0169 0.51 -1.0 221,688 - PP_0169 0.51 -0.0 221,688 - PP_0169 0.51 +0.1 221,688 - PP_0169 0.51 +1.6 221,704 + PP_0169 0.53 -0.2 221,754 + PP_0169 0.58 -0.5 221,755 - PP_0169 0.58 -0.3 221,755 - PP_0169 0.58 +0.0 221,757 - PP_0169 0.59 -0.1 221,964 + PP_0169 0.82 +0.0 221,964 + PP_0169 0.82 +0.6 221,965 - PP_0169 0.82 +0.4 221,965 - PP_0169 0.82 +0.1 221,965 - PP_0169 0.82 +0.5 221,994 + PP_0169 0.85 +0.7 221,995 - PP_0169 0.85 -0.8 222,016 - PP_0169 0.87 -0.1 222,016 - PP_0169 0.87 +0.6
Or see this region's nucleotide sequence