Strain Fitness in Pseudomonas putida KT2440 around PP_4732

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4730 and PP_4731 are separated by 97 nucleotidesPP_4731 and PP_4732 are separated by 64 nucleotidesPP_4732 and PP_4733 are separated by 49 nucleotidesPP_4733 and PP_4734 are separated by 132 nucleotides PP_4730: PP_4730 - ferric iron uptake global transcriptional repressor Fur-Fe+2, at 5,380,197 to 5,380,601 _4730 PP_4731: PP_4731 - Outer membrane protein assembly factor BamE, at 5,380,699 to 5,381,235 _4731 PP_4732: PP_4732 - conserved protein of unknown function, at 5,381,300 to 5,381,848 _4732 PP_4733: PP_4733 - SsrA-binding protein, at 5,381,898 to 5,382,380 _4733 PP_4734: PP_4734 - DNA-binding transcriptional dual regulator, LldR-L-lactate, at 5,382,513 to 5,383,280 _4734 Position (kb) 5381 5382Strain fitness (log2 ratio) -2 -1 0 1 2at 5381.294 kb on + strandat 5381.294 kb on + strandat 5381.295 kb on - strandat 5381.295 kb on - strandat 5381.296 kb on + strandat 5381.296 kb on + strandat 5381.297 kb on - strandat 5381.297 kb on - strandat 5381.297 kb on - strandat 5381.297 kb on - strandat 5381.297 kb on - strandat 5381.814 kb on - strandat 5381.883 kb on + strandat 5381.883 kb on + strandat 5381.883 kb on + strandat 5381.897 kb on + strandat 5382.378 kb on + strandat 5382.378 kb on + strandat 5382.379 kb on - strandat 5382.382 kb on + strandat 5382.382 kb on + strandat 5382.382 kb on + strandat 5382.383 kb on - strandat 5382.383 kb on - strandat 5382.460 kb on - strandat 5382.496 kb on + strandat 5382.505 kb on + strandat 5382.506 kb on - strandat 5382.589 kb on + strandat 5382.590 kb on - strand, within PP_4734at 5382.590 kb on - strand, within PP_4734at 5382.652 kb on + strand, within PP_4734at 5382.652 kb on + strand, within PP_4734at 5382.652 kb on + strand, within PP_4734at 5382.706 kb on + strand, within PP_4734at 5382.706 kb on + strand, within PP_4734at 5382.706 kb on + strand, within PP_4734at 5382.706 kb on + strand, within PP_4734at 5382.706 kb on + strand, within PP_4734at 5382.706 kb on + strand, within PP_4734at 5382.707 kb on - strand, within PP_4734

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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5,381,294 + -0.6
5,381,294 + -2.0
5,381,295 - +0.9
5,381,295 - -0.2
5,381,296 + -0.7
5,381,296 + -1.0
5,381,297 - -0.3
5,381,297 - -2.4
5,381,297 - +0.3
5,381,297 - +2.3
5,381,297 - -1.3
5,381,814 - +2.1
5,381,883 + -0.6
5,381,883 + +0.1
5,381,883 + -0.5
5,381,897 + +0.9
5,382,378 + +0.3
5,382,378 + -2.0
5,382,379 - +0.6
5,382,382 + -0.5
5,382,382 + -1.3
5,382,382 + +0.6
5,382,383 - +1.0
5,382,383 - +0.4
5,382,460 - -0.7
5,382,496 + -0.2
5,382,505 + -0.5
5,382,506 - +1.3
5,382,589 + +1.3
5,382,590 - PP_4734 0.10 -0.3
5,382,590 - PP_4734 0.10 +0.3
5,382,652 + PP_4734 0.18 +1.5
5,382,652 + PP_4734 0.18 +1.3
5,382,652 + PP_4734 0.18 +1.6
5,382,706 + PP_4734 0.25 +0.5
5,382,706 + PP_4734 0.25 +0.1
5,382,706 + PP_4734 0.25 -0.3
5,382,706 + PP_4734 0.25 +0.1
5,382,706 + PP_4734 0.25 +0.8
5,382,706 + PP_4734 0.25 -1.3
5,382,707 - PP_4734 0.25 +1.0

Or see this region's nucleotide sequence