Strain Fitness in Pseudomonas putida KT2440 around PP_0104

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0103 and PP_0104 are separated by 43 nucleotidesPP_0104 and PP_0105 are separated by 9 nucleotidesPP_0105 and PP_0106 are separated by 16 nucleotides PP_0103: PP_0103 - cytochrome c oxidase subunit 2, at 108,810 to 109,937 _0103 PP_0104: PP_0104 - Cytochrome c oxidase subunit 1, at 109,981 to 111,570 _0104 PP_0105: PP_0105 - Cytochrome C oxidase assembly protein, at 111,580 to 112,146 _0105 PP_0106: PP_0106 - cytochrome c oxidase subunit 3, at 112,163 to 113,050 _0106 Position (kb) 109 110 111 112Strain fitness (log2 ratio) -2 -1 0 1 2at 109.121 kb on + strand, within PP_0103at 109.143 kb on + strand, within PP_0103at 109.143 kb on + strand, within PP_0103at 109.143 kb on + strand, within PP_0103at 109.144 kb on - strand, within PP_0103at 109.144 kb on - strand, within PP_0103at 109.144 kb on - strand, within PP_0103at 109.144 kb on - strand, within PP_0103at 109.203 kb on + strand, within PP_0103at 109.204 kb on - strand, within PP_0103at 109.294 kb on - strand, within PP_0103at 109.467 kb on + strand, within PP_0103at 109.468 kb on - strand, within PP_0103at 109.468 kb on - strand, within PP_0103at 109.468 kb on - strand, within PP_0103at 109.468 kb on - strand, within PP_0103at 109.468 kb on - strand, within PP_0103at 109.653 kb on + strand, within PP_0103at 109.653 kb on + strand, within PP_0103at 109.653 kb on + strand, within PP_0103at 109.654 kb on - strand, within PP_0103at 109.843 kb on + strandat 109.844 kb on - strandat 109.844 kb on - strandat 109.844 kb on - strandat 109.852 kb on - strandat 109.852 kb on - strandat 110.073 kb on + strandat 110.073 kb on + strandat 110.073 kb on + strandat 110.073 kb on + strandat 110.074 kb on - strandat 110.092 kb on + strandat 110.093 kb on - strandat 110.093 kb on - strandat 110.093 kb on - strandat 110.093 kb on - strandat 110.423 kb on - strand, within PP_0104at 110.423 kb on - strand, within PP_0104at 110.423 kb on - strand, within PP_0104at 110.443 kb on + strand, within PP_0104at 110.443 kb on + strand, within PP_0104at 110.444 kb on - strand, within PP_0104at 110.444 kb on - strand, within PP_0104at 110.444 kb on - strand, within PP_0104at 110.444 kb on - strand, within PP_0104at 110.444 kb on - strand, within PP_0104at 110.493 kb on + strand, within PP_0104at 110.633 kb on + strand, within PP_0104at 110.634 kb on - strand, within PP_0104at 110.634 kb on - strand, within PP_0104at 110.634 kb on - strand, within PP_0104at 110.634 kb on - strand, within PP_0104at 110.761 kb on + strand, within PP_0104at 110.761 kb on + strand, within PP_0104at 110.762 kb on - strand, within PP_0104at 110.836 kb on + strandat 110.838 kb on + strand, within PP_0104at 110.838 kb on + strand, within PP_0104at 110.839 kb on - strand, within PP_0104at 110.851 kb on + strand, within PP_0104at 110.851 kb on + strand, within PP_0104at 110.851 kb on + strand, within PP_0104at 110.851 kb on + strand, within PP_0104at 110.851 kb on + strand, within PP_0104at 110.852 kb on - strand, within PP_0104at 110.901 kb on + strand, within PP_0104at 110.901 kb on + strand, within PP_0104at 110.901 kb on + strand, within PP_0104at 110.901 kb on + strand, within PP_0104at 110.902 kb on - strand, within PP_0104at 110.902 kb on - strand, within PP_0104at 110.902 kb on - strand, within PP_0104at 110.902 kb on - strand, within PP_0104at 110.987 kb on + strand, within PP_0104at 110.987 kb on + strand, within PP_0104at 110.988 kb on - strand, within PP_0104at 111.127 kb on + strand, within PP_0104at 111.139 kb on + strand, within PP_0104at 111.139 kb on + strand, within PP_0104at 111.139 kb on + strand, within PP_0104at 111.140 kb on - strand, within PP_0104at 111.163 kb on + strand, within PP_0104at 111.163 kb on + strand, within PP_0104at 111.163 kb on + strand, within PP_0104at 111.163 kb on + strand, within PP_0104at 111.163 kb on + strand, within PP_0104at 111.164 kb on - strand, within PP_0104at 111.164 kb on - strand, within PP_0104at 111.167 kb on + strand, within PP_0104at 111.167 kb on + strand, within PP_0104at 111.167 kb on + strand, within PP_0104at 111.167 kb on + strand, within PP_0104at 111.167 kb on + strand, within PP_0104at 111.168 kb on - strand, within PP_0104at 111.168 kb on - strand, within PP_0104at 111.168 kb on - strand, within PP_0104at 111.208 kb on + strand, within PP_0104at 111.241 kb on + strand, within PP_0104at 111.242 kb on - strand, within PP_0104at 111.242 kb on - strand, within PP_0104at 111.242 kb on - strand, within PP_0104at 111.320 kb on + strand, within PP_0104at 111.320 kb on + strand, within PP_0104at 111.355 kb on + strand, within PP_0104at 111.535 kb on + strandat 111.569 kb on - strandat 111.569 kb on - strandat 111.670 kb on + strand, within PP_0105at 111.671 kb on - strand, within PP_0105at 111.696 kb on + strand, within PP_0105at 111.721 kb on + strand, within PP_0105at 111.721 kb on + strand, within PP_0105at 111.808 kb on + strand, within PP_0105at 111.808 kb on + strand, within PP_0105at 111.809 kb on - strand, within PP_0105at 111.809 kb on - strand, within PP_0105at 111.909 kb on - strand, within PP_0105at 111.919 kb on - strand, within PP_0105at 111.970 kb on - strand, within PP_0105at 112.069 kb on + strand, within PP_0105at 112.181 kb on + strandat 112.181 kb on + strandat 112.181 kb on + strandat 112.181 kb on + strandat 112.182 kb on - strandat 112.182 kb on - strandat 112.182 kb on - strandat 112.182 kb on - strandat 112.182 kb on - strandat 112.184 kb on + strandat 112.184 kb on + strandat 112.185 kb on - strandat 112.185 kb on - strandat 112.185 kb on - strandat 112.185 kb on - strandat 112.185 kb on - strandat 112.185 kb on - strandat 112.337 kb on + strand, within PP_0106at 112.337 kb on + strand, within PP_0106at 112.337 kb on + strand, within PP_0106at 112.338 kb on - strand, within PP_0106at 112.392 kb on - strand, within PP_0106at 112.487 kb on + strand, within PP_0106at 112.488 kb on - strand, within PP_0106at 112.488 kb on - strand, within PP_0106at 112.488 kb on - strand, within PP_0106at 112.488 kb on - strand, within PP_0106at 112.497 kb on + strand, within PP_0106

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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109,121 + PP_0103 0.28 -0.9
109,143 + PP_0103 0.30 -0.7
109,143 + PP_0103 0.30 -1.2
109,143 + PP_0103 0.30 -0.7
109,144 - PP_0103 0.30 -1.3
109,144 - PP_0103 0.30 +0.4
109,144 - PP_0103 0.30 +0.4
109,144 - PP_0103 0.30 -0.2
109,203 + PP_0103 0.35 -0.4
109,204 - PP_0103 0.35 +0.2
109,294 - PP_0103 0.43 +0.5
109,467 + PP_0103 0.58 +1.7
109,468 - PP_0103 0.58 +0.8
109,468 - PP_0103 0.58 -0.2
109,468 - PP_0103 0.58 -1.2
109,468 - PP_0103 0.58 -1.2
109,468 - PP_0103 0.58 -0.6
109,653 + PP_0103 0.75 -2.4
109,653 + PP_0103 0.75 -1.8
109,653 + PP_0103 0.75 +0.8
109,654 - PP_0103 0.75 -1.6
109,843 + +0.4
109,844 - +0.8
109,844 - +0.8
109,844 - -1.2
109,852 - -0.5
109,852 - +0.0
110,073 + -0.5
110,073 + -1.0
110,073 + -0.7
110,073 + +0.9
110,074 - +0.2
110,092 + +2.4
110,093 - +2.0
110,093 - -1.2
110,093 - -0.2
110,093 - +0.5
110,423 - PP_0104 0.28 -1.1
110,423 - PP_0104 0.28 -0.3
110,423 - PP_0104 0.28 -1.2
110,443 + PP_0104 0.29 -0.3
110,443 + PP_0104 0.29 -0.0
110,444 - PP_0104 0.29 -0.6
110,444 - PP_0104 0.29 -0.2
110,444 - PP_0104 0.29 -0.5
110,444 - PP_0104 0.29 -1.9
110,444 - PP_0104 0.29 +0.9
110,493 + PP_0104 0.32 -2.3
110,633 + PP_0104 0.41 -0.5
110,634 - PP_0104 0.41 +0.2
110,634 - PP_0104 0.41 +0.2
110,634 - PP_0104 0.41 -0.4
110,634 - PP_0104 0.41 +1.3
110,761 + PP_0104 0.49 -0.1
110,761 + PP_0104 0.49 -0.1
110,762 - PP_0104 0.49 +0.2
110,836 + +1.7
110,838 + PP_0104 0.54 -0.4
110,838 + PP_0104 0.54 +0.0
110,839 - PP_0104 0.54 -0.3
110,851 + PP_0104 0.55 -0.8
110,851 + PP_0104 0.55 -1.0
110,851 + PP_0104 0.55 -1.4
110,851 + PP_0104 0.55 -0.2
110,851 + PP_0104 0.55 -2.0
110,852 - PP_0104 0.55 -0.3
110,901 + PP_0104 0.58 -0.6
110,901 + PP_0104 0.58 +0.2
110,901 + PP_0104 0.58 -0.9
110,901 + PP_0104 0.58 +0.6
110,902 - PP_0104 0.58 -1.2
110,902 - PP_0104 0.58 +1.2
110,902 - PP_0104 0.58 -0.4
110,902 - PP_0104 0.58 -1.0
110,987 + PP_0104 0.63 +0.8
110,987 + PP_0104 0.63 -0.2
110,988 - PP_0104 0.63 -0.6
111,127 + PP_0104 0.72 -0.6
111,139 + PP_0104 0.73 -0.6
111,139 + PP_0104 0.73 -0.2
111,139 + PP_0104 0.73 -2.2
111,140 - PP_0104 0.73 -0.7
111,163 + PP_0104 0.74 -0.0
111,163 + PP_0104 0.74 -0.3
111,163 + PP_0104 0.74 -1.2
111,163 + PP_0104 0.74 -0.3
111,163 + PP_0104 0.74 -1.0
111,164 - PP_0104 0.74 -0.3
111,164 - PP_0104 0.74 -0.4
111,167 + PP_0104 0.75 -1.0
111,167 + PP_0104 0.75 -0.6
111,167 + PP_0104 0.75 +0.6
111,167 + PP_0104 0.75 -0.5
111,167 + PP_0104 0.75 +0.4
111,168 - PP_0104 0.75 -0.7
111,168 - PP_0104 0.75 -0.6
111,168 - PP_0104 0.75 +0.4
111,208 + PP_0104 0.77 +0.1
111,241 + PP_0104 0.79 +0.2
111,242 - PP_0104 0.79 +0.8
111,242 - PP_0104 0.79 -1.0
111,242 - PP_0104 0.79 +1.6
111,320 + PP_0104 0.84 +0.0
111,320 + PP_0104 0.84 +0.3
111,355 + PP_0104 0.86 +0.3
111,535 + -0.3
111,569 - +0.5
111,569 - -0.1
111,670 + PP_0105 0.16 +0.8
111,671 - PP_0105 0.16 +0.7
111,696 + PP_0105 0.20 -0.1
111,721 + PP_0105 0.25 +0.1
111,721 + PP_0105 0.25 -0.6
111,808 + PP_0105 0.40 -1.4
111,808 + PP_0105 0.40 +0.5
111,809 - PP_0105 0.40 -0.6
111,809 - PP_0105 0.40 -0.6
111,909 - PP_0105 0.58 -0.4
111,919 - PP_0105 0.60 -1.1
111,970 - PP_0105 0.69 +0.2
112,069 + PP_0105 0.86 -0.2
112,181 + -1.2
112,181 + -0.4
112,181 + +1.1
112,181 + +0.3
112,182 - -0.8
112,182 - +0.5
112,182 - -0.1
112,182 - +1.0
112,182 - -0.3
112,184 + +0.2
112,184 + +0.1
112,185 - -2.7
112,185 - +0.8
112,185 - -0.9
112,185 - -0.8
112,185 - -0.6
112,185 - -2.4
112,337 + PP_0106 0.20 +0.6
112,337 + PP_0106 0.20 +0.0
112,337 + PP_0106 0.20 -0.4
112,338 - PP_0106 0.20 -0.3
112,392 - PP_0106 0.26 -0.5
112,487 + PP_0106 0.36 -2.1
112,488 - PP_0106 0.37 -2.0
112,488 - PP_0106 0.37 +0.1
112,488 - PP_0106 0.37 -1.4
112,488 - PP_0106 0.37 -0.2
112,497 + PP_0106 0.38 +0.5

Or see this region's nucleotide sequence