Strain Fitness in Pseudomonas putida KT2440 around PP_0056

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0055 and PP_0056 are separated by 227 nucleotidesPP_0056 and PP_0057 are separated by 97 nucleotides PP_0055: PP_0055 - transcriptional regulator, at 63,828 to 64,715 _0055 PP_0056: PP_0056 - choline dehydrogenase, at 64,943 to 66,595 _0056 PP_0057: PP_0057 - major facilitator family transporter, at 66,693 to 68,312 _0057 Position (kb) 64 65 66 67Strain fitness (log2 ratio) -2 -1 0 1at 64.000 kb on + strand, within PP_0055at 64.000 kb on + strand, within PP_0055at 64.001 kb on - strand, within PP_0055at 64.001 kb on - strand, within PP_0055at 64.001 kb on - strand, within PP_0055at 64.087 kb on - strand, within PP_0055at 64.144 kb on + strandat 64.207 kb on + strand, within PP_0055at 64.207 kb on + strand, within PP_0055at 64.207 kb on + strand, within PP_0055at 64.222 kb on + strand, within PP_0055at 64.222 kb on + strand, within PP_0055at 64.222 kb on + strandat 64.223 kb on - strand, within PP_0055at 64.223 kb on - strand, within PP_0055at 64.223 kb on - strand, within PP_0055at 64.223 kb on - strand, within PP_0055at 64.224 kb on + strand, within PP_0055at 64.237 kb on + strand, within PP_0055at 64.366 kb on + strand, within PP_0055at 64.608 kb on - strand, within PP_0055at 64.631 kb on + strandat 64.632 kb on - strandat 64.726 kb on + strandat 64.726 kb on + strandat 64.750 kb on - strandat 64.788 kb on + strandat 64.831 kb on + strandat 64.904 kb on + strandat 64.905 kb on - strandat 64.925 kb on + strandat 64.926 kb on - strandat 64.926 kb on - strandat 64.926 kb on - strandat 64.976 kb on + strandat 64.976 kb on + strandat 64.976 kb on + strandat 64.977 kb on - strandat 65.081 kb on + strandat 65.081 kb on + strandat 65.081 kb on + strandat 65.082 kb on - strandat 65.082 kb on - strandat 65.082 kb on - strandat 65.082 kb on - strandat 65.108 kb on + strandat 65.114 kb on + strand, within PP_0056at 65.114 kb on + strand, within PP_0056at 65.193 kb on - strand, within PP_0056at 65.211 kb on + strand, within PP_0056at 65.211 kb on + strand, within PP_0056at 65.211 kb on + strand, within PP_0056at 65.212 kb on - strand, within PP_0056at 65.212 kb on - strand, within PP_0056at 65.212 kb on - strand, within PP_0056at 65.243 kb on + strand, within PP_0056at 65.243 kb on + strand, within PP_0056at 65.244 kb on - strand, within PP_0056at 65.244 kb on - strand, within PP_0056at 65.320 kb on - strand, within PP_0056at 65.320 kb on - strand, within PP_0056at 65.408 kb on + strand, within PP_0056at 65.409 kb on - strand, within PP_0056at 65.409 kb on - strand, within PP_0056at 65.622 kb on + strand, within PP_0056at 65.622 kb on + strand, within PP_0056at 65.622 kb on + strand, within PP_0056at 65.622 kb on + strand, within PP_0056at 65.623 kb on - strand, within PP_0056at 65.623 kb on - strand, within PP_0056at 65.724 kb on + strand, within PP_0056at 65.788 kb on + strand, within PP_0056at 65.859 kb on - strand, within PP_0056at 65.880 kb on - strand, within PP_0056at 65.933 kb on + strand, within PP_0056at 65.934 kb on - strand, within PP_0056at 65.939 kb on + strand, within PP_0056at 65.940 kb on - strand, within PP_0056at 65.940 kb on - strand, within PP_0056at 65.979 kb on + strand, within PP_0056at 65.980 kb on - strand, within PP_0056at 66.029 kb on + strand, within PP_0056at 66.091 kb on + strand, within PP_0056at 66.091 kb on + strand, within PP_0056at 66.092 kb on - strand, within PP_0056at 66.092 kb on - strand, within PP_0056at 66.092 kb on - strand, within PP_0056at 66.186 kb on - strand, within PP_0056at 66.186 kb on - strand, within PP_0056at 66.186 kb on - strand, within PP_0056at 66.186 kb on - strand, within PP_0056at 66.287 kb on + strand, within PP_0056at 66.287 kb on + strand, within PP_0056at 66.287 kb on + strand, within PP_0056at 66.288 kb on - strand, within PP_0056at 66.288 kb on - strand, within PP_0056at 66.374 kb on - strand, within PP_0056at 66.444 kb on + strandat 66.444 kb on + strandat 66.444 kb on + strandat 66.445 kb on - strandat 66.445 kb on - strandat 66.450 kb on + strandat 66.450 kb on + strandat 66.477 kb on + strandat 66.478 kb on - strandat 66.490 kb on + strandat 66.490 kb on + strandat 66.490 kb on + strandat 66.491 kb on - strandat 66.491 kb on - strandat 66.491 kb on - strandat 66.491 kb on - strandat 66.491 kb on - strandat 66.563 kb on + strandat 66.659 kb on - strandat 66.659 kb on - strandat 66.702 kb on + strandat 66.702 kb on + strandat 66.702 kb on + strandat 66.702 kb on + strandat 66.703 kb on - strandat 66.703 kb on - strandat 66.703 kb on - strandat 66.732 kb on - strandat 66.813 kb on + strandat 66.813 kb on + strandat 66.814 kb on - strandat 66.814 kb on - strandat 66.814 kb on - strandat 66.814 kb on - strandat 66.814 kb on - strandat 66.867 kb on - strand, within PP_0057at 67.038 kb on + strand, within PP_0057at 67.039 kb on - strand, within PP_0057at 67.134 kb on + strand, within PP_0057at 67.134 kb on + strand, within PP_0057at 67.134 kb on + strand, within PP_0057at 67.135 kb on - strand, within PP_0057at 67.135 kb on - strand, within PP_0057at 67.135 kb on - strand, within PP_0057at 67.245 kb on + strand, within PP_0057at 67.245 kb on + strand, within PP_0057at 67.246 kb on - strand, within PP_0057at 67.247 kb on + strand, within PP_0057at 67.247 kb on + strand, within PP_0057at 67.247 kb on + strand, within PP_0057at 67.247 kb on + strand, within PP_0057at 67.247 kb on + strand, within PP_0057at 67.248 kb on - strand, within PP_0057at 67.248 kb on - strand, within PP_0057at 67.446 kb on - strand, within PP_0057at 67.488 kb on + strand, within PP_0057at 67.489 kb on - strand, within PP_0057at 67.489 kb on - strand, within PP_0057at 67.489 kb on - strand, within PP_0057at 67.489 kb on - strand, within PP_0057at 67.503 kb on + strand, within PP_0057at 67.503 kb on + strand, within PP_0057at 67.504 kb on - strand, within PP_0057at 67.504 kb on - strand, within PP_0057at 67.504 kb on - strand, within PP_0057at 67.504 kb on - strand, within PP_0057at 67.504 kb on - strand, within PP_0057

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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64,000 + PP_0055 0.19 -0.2
64,000 + PP_0055 0.19 -1.9
64,001 - PP_0055 0.19 -0.2
64,001 - PP_0055 0.19 -0.6
64,001 - PP_0055 0.19 -0.3
64,087 - PP_0055 0.29 -0.3
64,144 + +1.1
64,207 + PP_0055 0.43 -0.3
64,207 + PP_0055 0.43 -0.5
64,207 + PP_0055 0.43 -0.9
64,222 + PP_0055 0.44 -0.2
64,222 + PP_0055 0.44 +0.5
64,222 + +0.3
64,223 - PP_0055 0.44 -2.0
64,223 - PP_0055 0.44 -0.5
64,223 - PP_0055 0.44 +0.3
64,223 - PP_0055 0.44 -0.4
64,224 + PP_0055 0.45 +0.4
64,237 + PP_0055 0.46 -0.4
64,366 + PP_0055 0.61 -0.3
64,608 - PP_0055 0.88 -0.1
64,631 + -0.3
64,632 - -0.2
64,726 + +0.4
64,726 + -1.2
64,750 - -0.1
64,788 + +0.8
64,831 + -0.8
64,904 + +0.3
64,905 - -0.3
64,925 + +0.5
64,926 - -0.6
64,926 - -0.3
64,926 - -0.5
64,976 + +0.4
64,976 + -1.0
64,976 + -0.1
64,977 - -1.0
65,081 + -0.0
65,081 + -0.9
65,081 + +0.4
65,082 - -1.2
65,082 - -0.7
65,082 - -1.8
65,082 - -0.4
65,108 + -0.4
65,114 + PP_0056 0.10 -1.2
65,114 + PP_0056 0.10 +0.2
65,193 - PP_0056 0.15 -0.9
65,211 + PP_0056 0.16 +0.1
65,211 + PP_0056 0.16 -0.2
65,211 + PP_0056 0.16 -0.9
65,212 - PP_0056 0.16 +0.5
65,212 - PP_0056 0.16 -0.2
65,212 - PP_0056 0.16 +0.4
65,243 + PP_0056 0.18 +0.6
65,243 + PP_0056 0.18 +0.7
65,244 - PP_0056 0.18 -0.9
65,244 - PP_0056 0.18 -0.2
65,320 - PP_0056 0.23 -0.5
65,320 - PP_0056 0.23 -0.1
65,408 + PP_0056 0.28 -0.6
65,409 - PP_0056 0.28 +1.0
65,409 - PP_0056 0.28 -1.0
65,622 + PP_0056 0.41 -0.5
65,622 + PP_0056 0.41 -0.3
65,622 + PP_0056 0.41 +0.1
65,622 + PP_0056 0.41 -0.1
65,623 - PP_0056 0.41 -0.2
65,623 - PP_0056 0.41 -0.1
65,724 + PP_0056 0.47 +0.7
65,788 + PP_0056 0.51 -0.3
65,859 - PP_0056 0.55 +0.1
65,880 - PP_0056 0.57 -0.1
65,933 + PP_0056 0.60 -0.5
65,934 - PP_0056 0.60 -0.2
65,939 + PP_0056 0.60 -0.1
65,940 - PP_0056 0.60 +0.2
65,940 - PP_0056 0.60 -0.2
65,979 + PP_0056 0.63 +0.5
65,980 - PP_0056 0.63 -0.7
66,029 + PP_0056 0.66 -0.0
66,091 + PP_0056 0.69 -0.2
66,091 + PP_0056 0.69 -1.5
66,092 - PP_0056 0.70 +0.6
66,092 - PP_0056 0.70 +0.2
66,092 - PP_0056 0.70 -0.2
66,186 - PP_0056 0.75 -1.0
66,186 - PP_0056 0.75 -0.4
66,186 - PP_0056 0.75 -0.9
66,186 - PP_0056 0.75 -0.6
66,287 + PP_0056 0.81 +0.0
66,287 + PP_0056 0.81 -0.2
66,287 + PP_0056 0.81 -0.4
66,288 - PP_0056 0.81 +0.5
66,288 - PP_0056 0.81 -0.2
66,374 - PP_0056 0.87 -0.8
66,444 + -0.6
66,444 + -0.7
66,444 + -0.2
66,445 - +0.0
66,445 - -0.6
66,450 + +0.0
66,450 + +1.0
66,477 + -0.3
66,478 - +0.5
66,490 + +0.3
66,490 + -0.4
66,490 + +0.3
66,491 - -0.3
66,491 - +0.2
66,491 - +0.2
66,491 - -0.3
66,491 - -0.1
66,563 + +0.2
66,659 - -0.8
66,659 - -0.7
66,702 + -1.4
66,702 + -0.1
66,702 + -0.1
66,702 + +0.2
66,703 - -0.4
66,703 - +0.5
66,703 - -1.0
66,732 - -0.6
66,813 + -1.1
66,813 + +0.2
66,814 - -0.6
66,814 - +0.2
66,814 - -0.8
66,814 - -0.0
66,814 - +1.1
66,867 - PP_0057 0.11 -0.7
67,038 + PP_0057 0.21 -0.3
67,039 - PP_0057 0.21 -0.8
67,134 + PP_0057 0.27 -0.4
67,134 + PP_0057 0.27 -0.9
67,134 + PP_0057 0.27 -0.5
67,135 - PP_0057 0.27 -0.6
67,135 - PP_0057 0.27 -0.0
67,135 - PP_0057 0.27 -0.7
67,245 + PP_0057 0.34 -0.3
67,245 + PP_0057 0.34 -0.9
67,246 - PP_0057 0.34 -0.7
67,247 + PP_0057 0.34 +0.2
67,247 + PP_0057 0.34 -1.0
67,247 + PP_0057 0.34 +0.4
67,247 + PP_0057 0.34 -0.6
67,247 + PP_0057 0.34 -0.4
67,248 - PP_0057 0.34 -0.5
67,248 - PP_0057 0.34 -0.5
67,446 - PP_0057 0.46 -0.9
67,488 + PP_0057 0.49 -0.3
67,489 - PP_0057 0.49 -0.4
67,489 - PP_0057 0.49 -0.6
67,489 - PP_0057 0.49 -1.7
67,489 - PP_0057 0.49 +0.5
67,503 + PP_0057 0.50 -0.4
67,503 + PP_0057 0.50 -0.1
67,504 - PP_0057 0.50 -1.0
67,504 - PP_0057 0.50 +0.5
67,504 - PP_0057 0.50 -0.8
67,504 - PP_0057 0.50 -1.0
67,504 - PP_0057 0.50 -0.5

Or see this region's nucleotide sequence