Strain Fitness in Pseudomonas putida KT2440 around PP_0179

Experiment: 1-Pentanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0177 and PP_0178 overlap by 4 nucleotidesPP_0178 and PP_0179 overlap by 4 nucleotidesPP_0179 and PP_0180 are separated by 143 nucleotides PP_0177: PP_0177 - conserved protein of unknown function, at 229,259 to 229,471 _0177 PP_0178: PP_0178 - putative efflux pump, at 229,468 to 230,343 _0178 PP_0179: PP_0179 - putative efflux transporter, at 230,340 to 231,758 _0179 PP_0180: PP_0180 - putative cytochrome c family protein, at 231,902 to 233,812 _0180 Position (kb) 230 231 232Strain fitness (log2 ratio) -1 0 1 2 3at 229.415 kb on + strand, within PP_0177at 229.415 kb on + strand, within PP_0177at 229.415 kb on + strand, within PP_0177at 229.416 kb on - strand, within PP_0177at 229.416 kb on - strand, within PP_0177at 229.416 kb on - strand, within PP_0177at 229.416 kb on - strand, within PP_0177at 229.558 kb on + strand, within PP_0178at 229.558 kb on + strand, within PP_0178at 229.559 kb on - strand, within PP_0178at 229.559 kb on - strand, within PP_0178at 229.559 kb on - strand, within PP_0178at 229.561 kb on + strand, within PP_0178at 229.561 kb on + strand, within PP_0178at 229.561 kb on + strand, within PP_0178at 229.561 kb on + strand, within PP_0178at 229.561 kb on + strand, within PP_0178at 229.562 kb on - strand, within PP_0178at 229.562 kb on - strand, within PP_0178at 229.562 kb on - strand, within PP_0178at 229.562 kb on - strand, within PP_0178at 229.562 kb on - strand, within PP_0178at 229.954 kb on + strand, within PP_0178at 229.954 kb on + strand, within PP_0178at 229.955 kb on - strand, within PP_0178at 230.035 kb on + strand, within PP_0178at 230.035 kb on + strand, within PP_0178at 230.036 kb on - strand, within PP_0178at 230.077 kb on - strand, within PP_0178at 230.082 kb on + strand, within PP_0178at 230.083 kb on - strand, within PP_0178at 230.083 kb on - strand, within PP_0178at 230.083 kb on - strand, within PP_0178at 230.229 kb on - strand, within PP_0178at 230.406 kb on + strandat 230.406 kb on + strandat 230.517 kb on + strand, within PP_0179at 230.758 kb on - strand, within PP_0179at 230.880 kb on + strand, within PP_0179at 230.880 kb on + strand, within PP_0179at 230.880 kb on + strand, within PP_0179at 230.880 kb on + strand, within PP_0179at 230.881 kb on - strand, within PP_0179at 230.881 kb on - strand, within PP_0179at 230.881 kb on - strand, within PP_0179at 230.882 kb on + strand, within PP_0179at 230.883 kb on - strand, within PP_0179at 230.883 kb on - strand, within PP_0179at 230.910 kb on + strand, within PP_0179at 230.911 kb on - strand, within PP_0179at 231.081 kb on + strand, within PP_0179at 231.081 kb on + strand, within PP_0179at 231.081 kb on + strand, within PP_0179at 231.081 kb on + strand, within PP_0179at 231.081 kb on + strand, within PP_0179at 231.081 kb on + strand, within PP_0179at 231.081 kb on + strand, within PP_0179at 231.082 kb on - strand, within PP_0179at 231.082 kb on - strand, within PP_0179at 231.082 kb on - strand, within PP_0179at 231.082 kb on - strand, within PP_0179at 231.082 kb on - strand, within PP_0179at 231.082 kb on - strand, within PP_0179at 231.082 kb on - strand, within PP_0179at 231.082 kb on - strand, within PP_0179at 231.255 kb on + strand, within PP_0179at 231.255 kb on + strand, within PP_0179at 231.256 kb on - strand, within PP_0179at 231.257 kb on + strand, within PP_0179at 231.258 kb on - strand, within PP_0179at 231.258 kb on - strand, within PP_0179at 231.513 kb on + strand, within PP_0179at 231.514 kb on - strand, within PP_0179at 231.597 kb on + strand, within PP_0179at 231.648 kb on + strandat 231.648 kb on + strandat 231.649 kb on - strandat 231.649 kb on - strandat 231.649 kb on - strandat 231.684 kb on - strandat 231.808 kb on + strandat 232.031 kb on + strandat 232.031 kb on + strandat 232.032 kb on - strandat 232.119 kb on + strand, within PP_0180at 232.154 kb on - strand, within PP_0180at 232.223 kb on - strand, within PP_0180at 232.223 kb on - strand, within PP_0180at 232.223 kb on - strand, within PP_0180at 232.275 kb on - strand, within PP_0180at 232.446 kb on + strand, within PP_0180at 232.446 kb on + strand, within PP_0180at 232.447 kb on - strand, within PP_0180at 232.447 kb on - strand, within PP_0180at 232.463 kb on + strand, within PP_0180at 232.463 kb on + strand, within PP_0180at 232.464 kb on - strand, within PP_0180at 232.464 kb on - strand, within PP_0180at 232.464 kb on - strand, within PP_0180at 232.464 kb on - strand, within PP_0180at 232.464 kb on - strand, within PP_0180at 232.464 kb on - strand, within PP_0180at 232.464 kb on - strand, within PP_0180at 232.464 kb on - strand, within PP_0180at 232.464 kb on - strand, within PP_0180at 232.465 kb on + strand, within PP_0180at 232.465 kb on + strand, within PP_0180at 232.486 kb on - strand, within PP_0180at 232.553 kb on + strand, within PP_0180at 232.553 kb on + strand, within PP_0180at 232.553 kb on + strand, within PP_0180at 232.554 kb on - strand, within PP_0180at 232.555 kb on + strand, within PP_0180at 232.710 kb on + strand, within PP_0180at 232.711 kb on - strand, within PP_0180at 232.739 kb on + strandat 232.739 kb on + strand, within PP_0180

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-Pentanol (C)
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229,415 + PP_0177 0.73 +0.7
229,415 + PP_0177 0.73 +0.7
229,415 + PP_0177 0.73 +0.9
229,416 - PP_0177 0.74 +0.4
229,416 - PP_0177 0.74 +0.1
229,416 - PP_0177 0.74 +1.2
229,416 - PP_0177 0.74 +0.0
229,558 + PP_0178 0.10 +0.5
229,558 + PP_0178 0.10 +3.0
229,559 - PP_0178 0.10 +1.1
229,559 - PP_0178 0.10 -0.1
229,559 - PP_0178 0.10 +0.4
229,561 + PP_0178 0.11 +0.7
229,561 + PP_0178 0.11 +0.2
229,561 + PP_0178 0.11 -0.0
229,561 + PP_0178 0.11 -0.1
229,561 + PP_0178 0.11 -0.1
229,562 - PP_0178 0.11 +1.0
229,562 - PP_0178 0.11 +1.0
229,562 - PP_0178 0.11 +0.2
229,562 - PP_0178 0.11 +0.9
229,562 - PP_0178 0.11 -0.2
229,954 + PP_0178 0.55 -0.0
229,954 + PP_0178 0.55 +0.3
229,955 - PP_0178 0.56 +0.4
230,035 + PP_0178 0.65 +0.3
230,035 + PP_0178 0.65 +0.3
230,036 - PP_0178 0.65 +0.6
230,077 - PP_0178 0.70 +0.3
230,082 + PP_0178 0.70 +0.6
230,083 - PP_0178 0.70 +0.2
230,083 - PP_0178 0.70 +0.9
230,083 - PP_0178 0.70 +0.8
230,229 - PP_0178 0.87 -0.1
230,406 + +0.1
230,406 + -1.2
230,517 + PP_0179 0.12 -0.6
230,758 - PP_0179 0.29 +0.3
230,880 + PP_0179 0.38 +1.1
230,880 + PP_0179 0.38 +0.4
230,880 + PP_0179 0.38 -0.0
230,880 + PP_0179 0.38 +1.2
230,881 - PP_0179 0.38 +0.1
230,881 - PP_0179 0.38 -0.3
230,881 - PP_0179 0.38 +0.3
230,882 + PP_0179 0.38 +0.1
230,883 - PP_0179 0.38 +0.0
230,883 - PP_0179 0.38 -0.1
230,910 + PP_0179 0.40 +0.6
230,911 - PP_0179 0.40 +0.1
231,081 + PP_0179 0.52 -0.2
231,081 + PP_0179 0.52 +0.7
231,081 + PP_0179 0.52 +0.4
231,081 + PP_0179 0.52 +0.3
231,081 + PP_0179 0.52 +0.8
231,081 + PP_0179 0.52 +0.1
231,081 + PP_0179 0.52 -1.2
231,082 - PP_0179 0.52 +0.4
231,082 - PP_0179 0.52 -0.3
231,082 - PP_0179 0.52 +0.2
231,082 - PP_0179 0.52 +0.1
231,082 - PP_0179 0.52 +0.5
231,082 - PP_0179 0.52 +0.2
231,082 - PP_0179 0.52 +0.4
231,082 - PP_0179 0.52 +1.1
231,255 + PP_0179 0.64 +1.1
231,255 + PP_0179 0.64 +0.1
231,256 - PP_0179 0.65 +0.6
231,257 + PP_0179 0.65 +1.4
231,258 - PP_0179 0.65 +0.1
231,258 - PP_0179 0.65 +0.8
231,513 + PP_0179 0.83 +0.6
231,514 - PP_0179 0.83 +1.5
231,597 + PP_0179 0.89 +0.9
231,648 + +0.2
231,648 + +0.3
231,649 - +0.1
231,649 - +0.8
231,649 - +0.6
231,684 - +2.4
231,808 + +0.6
232,031 + +0.0
232,031 + +0.3
232,032 - +0.1
232,119 + PP_0180 0.11 -0.2
232,154 - PP_0180 0.13 +0.2
232,223 - PP_0180 0.17 -0.5
232,223 - PP_0180 0.17 +0.8
232,223 - PP_0180 0.17 +0.6
232,275 - PP_0180 0.20 +0.5
232,446 + PP_0180 0.28 -0.4
232,446 + PP_0180 0.28 -0.1
232,447 - PP_0180 0.29 +0.2
232,447 - PP_0180 0.29 +0.3
232,463 + PP_0180 0.29 -0.7
232,463 + PP_0180 0.29 -0.2
232,464 - PP_0180 0.29 -0.8
232,464 - PP_0180 0.29 +0.1
232,464 - PP_0180 0.29 -0.9
232,464 - PP_0180 0.29 +0.6
232,464 - PP_0180 0.29 -0.3
232,464 - PP_0180 0.29 -0.5
232,464 - PP_0180 0.29 -0.7
232,464 - PP_0180 0.29 -0.2
232,464 - PP_0180 0.29 -0.2
232,465 + PP_0180 0.29 +0.1
232,465 + PP_0180 0.29 +0.3
232,486 - PP_0180 0.31 -0.7
232,553 + PP_0180 0.34 +0.4
232,553 + PP_0180 0.34 -0.2
232,553 + PP_0180 0.34 -1.2
232,554 - PP_0180 0.34 +0.3
232,555 + PP_0180 0.34 +0.1
232,710 + PP_0180 0.42 -0.2
232,711 - PP_0180 0.42 -0.2
232,739 + -0.2
232,739 + PP_0180 0.44 -0.0

Or see this region's nucleotide sequence