Strain Fitness in Pseudomonas putida KT2440 around PP_4617

Experiment: 3-methyl-1-butanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4615 and PP_5701 are separated by 87 nucleotidesPP_5701 and PP_4616 are separated by 280 nucleotidesPP_4616 and PP_4617 are separated by 58 nucleotidesPP_4617 and PP_4618 are separated by 124 nucleotidesPP_4618 and PP_4619 overlap by 7 nucleotides PP_4615: PP_4615 - conserved membrane protein of unknown function, at 5,237,931 to 5,238,401 _4615 PP_5701: PP_5701 - conserved protein of unknown function, at 5,238,489 to 5,238,692 _5701 PP_4616: PP_4616 - conserved protein of unknown function, at 5,238,973 to 5,239,236 _4616 PP_4617: PP_4617 - leucine dehydrogenase, at 5,239,295 to 5,240,314 _4617 PP_4618: PP_4618 - conserved protein of unknown function, at 5,240,439 to 5,241,245 _4618 PP_4619: PP_4619 - Maleylacetoacetate isomerase, at 5,241,239 to 5,241,871 _4619 Position (kb) 5239 5240 5241Strain fitness (log2 ratio) -2 -1 0 1 2at 5238.314 kb on - strand, within PP_4615at 5238.314 kb on - strand, within PP_4615at 5238.419 kb on + strandat 5238.427 kb on + strandat 5238.427 kb on + strandat 5238.469 kb on + strandat 5238.619 kb on + strand, within PP_5701at 5238.620 kb on - strand, within PP_5701at 5238.620 kb on - strand, within PP_5701at 5238.691 kb on - strandat 5238.691 kb on - strandat 5238.708 kb on + strandat 5238.709 kb on - strandat 5238.709 kb on - strandat 5238.709 kb on - strandat 5238.709 kb on - strandat 5238.709 kb on - strandat 5238.758 kb on - strandat 5238.813 kb on + strandat 5238.814 kb on - strandat 5238.814 kb on - strandat 5238.814 kb on - strandat 5238.923 kb on + strandat 5238.961 kb on + strandat 5238.961 kb on + strandat 5238.961 kb on + strandat 5238.962 kb on - strandat 5238.962 kb on - strandat 5238.992 kb on - strandat 5238.992 kb on - strandat 5239.029 kb on + strand, within PP_4616at 5239.144 kb on + strand, within PP_4616at 5239.144 kb on + strand, within PP_4616at 5239.144 kb on + strand, within PP_4616at 5239.145 kb on - strand, within PP_4616at 5239.145 kb on - strand, within PP_4616at 5239.145 kb on - strand, within PP_4616at 5239.145 kb on - strand, within PP_4616at 5239.145 kb on - strand, within PP_4616at 5239.238 kb on - strandat 5239.259 kb on + strandat 5239.260 kb on - strandat 5239.302 kb on + strandat 5239.302 kb on + strandat 5239.303 kb on - strandat 5239.414 kb on + strand, within PP_4617at 5239.414 kb on + strand, within PP_4617at 5239.415 kb on - strand, within PP_4617at 5239.455 kb on + strand, within PP_4617at 5239.455 kb on + strand, within PP_4617at 5239.455 kb on + strand, within PP_4617at 5239.455 kb on + strand, within PP_4617at 5239.455 kb on + strand, within PP_4617at 5239.456 kb on - strand, within PP_4617at 5239.456 kb on - strand, within PP_4617at 5239.456 kb on - strand, within PP_4617at 5239.456 kb on - strand, within PP_4617at 5239.456 kb on - strand, within PP_4617at 5239.482 kb on + strand, within PP_4617at 5239.483 kb on - strand, within PP_4617at 5239.483 kb on - strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.494 kb on + strand, within PP_4617at 5239.495 kb on - strand, within PP_4617at 5239.495 kb on - strand, within PP_4617at 5239.495 kb on - strand, within PP_4617at 5239.495 kb on - strand, within PP_4617at 5239.495 kb on - strand, within PP_4617at 5239.495 kb on - strand, within PP_4617at 5239.499 kb on + strand, within PP_4617at 5239.499 kb on + strand, within PP_4617at 5239.499 kb on + strand, within PP_4617at 5239.499 kb on + strand, within PP_4617at 5239.499 kb on + strand, within PP_4617at 5239.500 kb on - strand, within PP_4617at 5239.500 kb on - strand, within PP_4617at 5239.500 kb on - strand, within PP_4617at 5239.530 kb on + strand, within PP_4617at 5239.637 kb on - strand, within PP_4617at 5239.859 kb on + strand, within PP_4617at 5239.859 kb on + strand, within PP_4617at 5239.859 kb on + strand, within PP_4617at 5239.859 kb on + strand, within PP_4617at 5239.860 kb on - strand, within PP_4617at 5239.926 kb on + strand, within PP_4617at 5239.926 kb on + strand, within PP_4617at 5240.121 kb on + strand, within PP_4617at 5240.121 kb on + strand, within PP_4617at 5240.121 kb on + strand, within PP_4617at 5240.121 kb on + strand, within PP_4617at 5240.121 kb on + strand, within PP_4617at 5240.121 kb on + strand, within PP_4617at 5240.121 kb on + strand, within PP_4617at 5240.122 kb on - strand, within PP_4617at 5240.122 kb on - strand, within PP_4617at 5240.122 kb on - strand, within PP_4617at 5240.347 kb on + strandat 5240.347 kb on + strandat 5240.347 kb on + strandat 5240.348 kb on - strandat 5240.348 kb on - strandat 5240.349 kb on + strandat 5240.349 kb on + strandat 5240.349 kb on + strandat 5240.350 kb on - strandat 5240.350 kb on - strandat 5240.350 kb on - strandat 5240.410 kb on + strandat 5240.411 kb on - strandat 5240.411 kb on - strandat 5240.411 kb on - strandat 5240.414 kb on - strandat 5240.433 kb on + strandat 5240.584 kb on + strand, within PP_4618at 5240.585 kb on - strand, within PP_4618at 5240.611 kb on + strand, within PP_4618at 5240.611 kb on + strand, within PP_4618at 5240.612 kb on - strand, within PP_4618at 5240.612 kb on - strand, within PP_4618at 5240.612 kb on - strand, within PP_4618at 5240.673 kb on + strand, within PP_4618at 5240.673 kb on + strand, within PP_4618at 5240.673 kb on + strand, within PP_4618at 5240.673 kb on + strand, within PP_4618at 5240.674 kb on - strandat 5240.674 kb on - strand, within PP_4618at 5240.713 kb on + strand, within PP_4618at 5240.714 kb on - strand, within PP_4618at 5240.786 kb on - strand, within PP_4618at 5240.786 kb on - strand, within PP_4618at 5241.015 kb on - strand, within PP_4618at 5241.087 kb on + strand, within PP_4618at 5241.109 kb on - strand, within PP_4618

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol (C)
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5,238,314 - PP_4615 0.81 -0.5
5,238,314 - PP_4615 0.81 -0.9
5,238,419 + -0.4
5,238,427 + +0.2
5,238,427 + +0.2
5,238,469 + +0.2
5,238,619 + PP_5701 0.64 -0.2
5,238,620 - PP_5701 0.64 -1.1
5,238,620 - PP_5701 0.64 -0.4
5,238,691 - -1.0
5,238,691 - +0.6
5,238,708 + -0.4
5,238,709 - +0.3
5,238,709 - +1.1
5,238,709 - +0.3
5,238,709 - -0.4
5,238,709 - +0.4
5,238,758 - +0.6
5,238,813 + +0.4
5,238,814 - -0.5
5,238,814 - -0.8
5,238,814 - -0.3
5,238,923 + -0.5
5,238,961 + +0.2
5,238,961 + -0.3
5,238,961 + -0.5
5,238,962 - +0.9
5,238,962 - +2.0
5,238,992 - -0.1
5,238,992 - +0.2
5,239,029 + PP_4616 0.21 -0.3
5,239,144 + PP_4616 0.65 -0.0
5,239,144 + PP_4616 0.65 -0.2
5,239,144 + PP_4616 0.65 -0.6
5,239,145 - PP_4616 0.65 +0.2
5,239,145 - PP_4616 0.65 +0.4
5,239,145 - PP_4616 0.65 -0.2
5,239,145 - PP_4616 0.65 +0.3
5,239,145 - PP_4616 0.65 +0.4
5,239,238 - -0.1
5,239,259 + +0.4
5,239,260 - +0.8
5,239,302 + +0.5
5,239,302 + +0.4
5,239,303 - +0.0
5,239,414 + PP_4617 0.12 +0.2
5,239,414 + PP_4617 0.12 +0.6
5,239,415 - PP_4617 0.12 -0.9
5,239,455 + PP_4617 0.16 -0.1
5,239,455 + PP_4617 0.16 -0.2
5,239,455 + PP_4617 0.16 +0.7
5,239,455 + PP_4617 0.16 +0.8
5,239,455 + PP_4617 0.16 +0.3
5,239,456 - PP_4617 0.16 +0.3
5,239,456 - PP_4617 0.16 -0.4
5,239,456 - PP_4617 0.16 -0.1
5,239,456 - PP_4617 0.16 +0.9
5,239,456 - PP_4617 0.16 +0.1
5,239,482 + PP_4617 0.18 +0.5
5,239,483 - PP_4617 0.18 -0.5
5,239,483 - PP_4617 0.18 -0.4
5,239,494 + PP_4617 0.20 -0.0
5,239,494 + PP_4617 0.20 +0.5
5,239,494 + PP_4617 0.20 +0.8
5,239,494 + PP_4617 0.20 +0.5
5,239,494 + PP_4617 0.20 -0.1
5,239,494 + PP_4617 0.20 +0.2
5,239,494 + PP_4617 0.20 +0.4
5,239,494 + PP_4617 0.20 +0.1
5,239,494 + PP_4617 0.20 +0.5
5,239,494 + PP_4617 0.20 -0.4
5,239,495 - PP_4617 0.20 -0.6
5,239,495 - PP_4617 0.20 +0.8
5,239,495 - PP_4617 0.20 +0.5
5,239,495 - PP_4617 0.20 -0.1
5,239,495 - PP_4617 0.20 -0.6
5,239,495 - PP_4617 0.20 +0.2
5,239,499 + PP_4617 0.20 -0.2
5,239,499 + PP_4617 0.20 +0.1
5,239,499 + PP_4617 0.20 +1.0
5,239,499 + PP_4617 0.20 -0.5
5,239,499 + PP_4617 0.20 -0.2
5,239,500 - PP_4617 0.20 -0.5
5,239,500 - PP_4617 0.20 -0.0
5,239,500 - PP_4617 0.20 -0.8
5,239,530 + PP_4617 0.23 +0.4
5,239,637 - PP_4617 0.34 +0.6
5,239,859 + PP_4617 0.55 -0.3
5,239,859 + PP_4617 0.55 -1.6
5,239,859 + PP_4617 0.55 +1.1
5,239,859 + PP_4617 0.55 +1.4
5,239,860 - PP_4617 0.55 -1.8
5,239,926 + PP_4617 0.62 +0.5
5,239,926 + PP_4617 0.62 +0.1
5,240,121 + PP_4617 0.81 +0.6
5,240,121 + PP_4617 0.81 +0.7
5,240,121 + PP_4617 0.81 -0.2
5,240,121 + PP_4617 0.81 +0.8
5,240,121 + PP_4617 0.81 +0.2
5,240,121 + PP_4617 0.81 -0.6
5,240,121 + PP_4617 0.81 -0.7
5,240,122 - PP_4617 0.81 -0.2
5,240,122 - PP_4617 0.81 +0.2
5,240,122 - PP_4617 0.81 +0.2
5,240,347 + -1.2
5,240,347 + -0.4
5,240,347 + +0.2
5,240,348 - +0.3
5,240,348 - -0.1
5,240,349 + -0.7
5,240,349 + +0.1
5,240,349 + +0.3
5,240,350 - +1.0
5,240,350 - +0.1
5,240,350 - -0.7
5,240,410 + +0.6
5,240,411 - -0.6
5,240,411 - -1.0
5,240,411 - -0.1
5,240,414 - +0.1
5,240,433 + +0.4
5,240,584 + PP_4618 0.18 +0.9
5,240,585 - PP_4618 0.18 -0.2
5,240,611 + PP_4618 0.21 +0.7
5,240,611 + PP_4618 0.21 -0.2
5,240,612 - PP_4618 0.21 +0.6
5,240,612 - PP_4618 0.21 -0.5
5,240,612 - PP_4618 0.21 +0.2
5,240,673 + PP_4618 0.29 -0.2
5,240,673 + PP_4618 0.29 -0.5
5,240,673 + PP_4618 0.29 +0.3
5,240,673 + PP_4618 0.29 +0.2
5,240,674 - -0.3
5,240,674 - PP_4618 0.29 -1.4
5,240,713 + PP_4618 0.34 -0.9
5,240,714 - PP_4618 0.34 -1.7
5,240,786 - PP_4618 0.43 +0.0
5,240,786 - PP_4618 0.43 -0.0
5,241,015 - PP_4618 0.71 -0.1
5,241,087 + PP_4618 0.80 +0.1
5,241,109 - PP_4618 0.83 +0.5

Or see this region's nucleotide sequence