Strain Fitness in Escherichia coli BW25113 around b2344

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfcY and b2343 are separated by 180 nucleotidesb2343 and fadL are separated by 371 nucleotidesfadL and yfdF are separated by 365 nucleotides b2342: yfcY - acetyl-CoA acetyltransferase (NCBI), at 2,457,181 to 2,458,491 yfcY b2343: b2343 - orf, hypothetical protein (VIMSS), at 2,458,672 to 2,458,956 b2343 b2344: fadL - long-chain fatty acid outer membrane transporter (RefSeq), at 2,459,328 to 2,460,668 fadL b2345: yfdF - hypothetical protein (NCBI), at 2,461,034 to 2,462,092 yfdF Position (kb) 2459 2460 2461Strain fitness (log2 ratio) -1 0 1 2 3 4at 2458.452 kb on + strandat 2458.470 kb on - strandat 2458.496 kb on - strandat 2458.654 kb on + strandat 2458.859 kb on - strand, within b2343at 2458.859 kb on - strand, within b2343at 2459.436 kb on + strandat 2459.503 kb on - strand, within fadLat 2459.653 kb on + strand, within fadLat 2459.729 kb on - strand, within fadLat 2459.751 kb on + strand, within fadLat 2459.855 kb on - strand, within fadLat 2459.935 kb on + strand, within fadLat 2459.935 kb on + strand, within fadLat 2460.075 kb on - strand, within fadLat 2460.075 kb on - strand, within fadLat 2460.124 kb on - strand, within fadLat 2460.124 kb on - strand, within fadLat 2460.289 kb on - strand, within fadLat 2460.289 kb on - strand, within fadLat 2460.352 kb on - strand, within fadLat 2460.397 kb on - strand, within fadLat 2460.399 kb on + strand, within fadLat 2460.399 kb on + strand, within fadLat 2460.399 kb on - strand, within fadLat 2460.413 kb on + strand, within fadLat 2460.421 kb on - strand, within fadLat 2460.433 kb on + strand, within fadLat 2460.440 kb on - strand, within fadLat 2460.467 kb on + strand, within fadLat 2460.467 kb on + strand, within fadLat 2460.483 kb on + strand, within fadLat 2460.484 kb on + strand, within fadLat 2460.484 kb on + strand, within fadLat 2460.484 kb on + strand, within fadLat 2460.487 kb on - strand, within fadLat 2460.516 kb on + strand, within fadLat 2460.521 kb on + strand, within fadLat 2460.521 kb on + strand, within fadLat 2460.579 kb on - strandat 2460.594 kb on + strandat 2460.600 kb on + strandat 2460.601 kb on + strandat 2460.601 kb on + strandat 2460.613 kb on - strandat 2460.646 kb on - strandat 2460.646 kb on - strandat 2460.646 kb on - strandat 2460.648 kb on + strandat 2460.673 kb on + strandat 2460.687 kb on + strandat 2460.691 kb on - strandat 2460.703 kb on - strandat 2460.703 kb on - strandat 2460.705 kb on - strandat 2460.706 kb on - strandat 2460.706 kb on - strandat 2460.713 kb on + strandat 2460.718 kb on - strandat 2460.724 kb on - strandat 2460.772 kb on - strandat 2460.810 kb on + strandat 2460.815 kb on - strandat 2460.850 kb on - strandat 2460.865 kb on + strandat 2460.865 kb on + strandat 2460.865 kb on + strandat 2460.899 kb on + strandat 2460.899 kb on + strandat 2460.907 kb on + strandat 2460.908 kb on + strandat 2460.908 kb on + strandat 2460.908 kb on + strandat 2460.908 kb on + strandat 2460.909 kb on + strandat 2460.913 kb on + strandat 2460.913 kb on + strandat 2460.915 kb on + strandat 2460.916 kb on - strandat 2460.917 kb on + strandat 2460.917 kb on + strandat 2460.917 kb on + strandat 2460.920 kb on + strandat 2460.920 kb on + strandat 2460.925 kb on + strandat 2461.077 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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2,458,452 + +0.2
2,458,470 - +0.6
2,458,496 - +0.4
2,458,654 + -1.2
2,458,859 - b2343 b2343 0.66 -0.3
2,458,859 - b2343 b2343 0.66 -1.4
2,459,436 + +2.3
2,459,503 - fadL b2344 0.13 +2.8
2,459,653 + fadL b2344 0.24 +2.9
2,459,729 - fadL b2344 0.30 +3.8
2,459,751 + fadL b2344 0.32 +2.4
2,459,855 - fadL b2344 0.39 +2.5
2,459,935 + fadL b2344 0.45 +3.1
2,459,935 + fadL b2344 0.45 +2.9
2,460,075 - fadL b2344 0.56 +4.0
2,460,075 - fadL b2344 0.56 +1.9
2,460,124 - fadL b2344 0.59 +2.0
2,460,124 - fadL b2344 0.59 +3.3
2,460,289 - fadL b2344 0.72 +1.7
2,460,289 - fadL b2344 0.72 +2.3
2,460,352 - fadL b2344 0.76 +2.8
2,460,397 - fadL b2344 0.80 +2.1
2,460,399 + fadL b2344 0.80 +3.0
2,460,399 + fadL b2344 0.80 +2.9
2,460,399 - fadL b2344 0.80 +2.8
2,460,413 + fadL b2344 0.81 +2.9
2,460,421 - fadL b2344 0.82 +1.5
2,460,433 + fadL b2344 0.82 +2.3
2,460,440 - fadL b2344 0.83 +2.0
2,460,467 + fadL b2344 0.85 +2.0
2,460,467 + fadL b2344 0.85 +3.0
2,460,483 + fadL b2344 0.86 +2.5
2,460,484 + fadL b2344 0.86 +2.9
2,460,484 + fadL b2344 0.86 +1.9
2,460,484 + fadL b2344 0.86 +1.5
2,460,487 - fadL b2344 0.86 +1.2
2,460,516 + fadL b2344 0.89 +2.3
2,460,521 + fadL b2344 0.89 +2.0
2,460,521 + fadL b2344 0.89 +2.7
2,460,579 - +2.4
2,460,594 + +2.5
2,460,600 + +1.7
2,460,601 + +2.7
2,460,601 + +2.5
2,460,613 - +2.6
2,460,646 - +2.0
2,460,646 - +2.4
2,460,646 - -0.6
2,460,648 + +2.6
2,460,673 + +0.4
2,460,687 + +0.3
2,460,691 - +3.0
2,460,703 - -0.6
2,460,703 - +1.0
2,460,705 - -1.0
2,460,706 - -1.3
2,460,706 - +2.6
2,460,713 + +2.0
2,460,718 - -0.7
2,460,724 - +0.6
2,460,772 - +1.0
2,460,810 + +0.2
2,460,815 - +1.0
2,460,850 - -0.6
2,460,865 + +0.3
2,460,865 + -0.4
2,460,865 + +0.3
2,460,899 + +0.3
2,460,899 + -0.4
2,460,907 + -0.2
2,460,908 + +0.1
2,460,908 + -1.4
2,460,908 + +0.7
2,460,908 + +0.6
2,460,909 + -0.1
2,460,913 + +0.3
2,460,913 + +0.1
2,460,915 + -0.5
2,460,916 - +1.0
2,460,917 + +0.4
2,460,917 + -0.0
2,460,917 + +0.9
2,460,920 + -0.2
2,460,920 + +0.0
2,460,925 + -0.3
2,461,077 - +0.0

Or see this region's nucleotide sequence