Strain Fitness in Pseudomonas putida KT2440 around PP_1761

Experiment: 1,3-Butandiol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1760 and PP_1761 are separated by 218 nucleotidesPP_1761 and PP_1762 are separated by 30 nucleotidesPP_1762 and PP_1763 are separated by 118 nucleotides PP_1760: PP_1760 - ABC transporter, ATP-binding protein, at 1,961,738 to 1,963,570 _1760 PP_1761: PP_1761 - diguanylate cyclase with phosphodiesterase domain, at 1,963,789 to 1,966,314 _1761 PP_1762: PP_1762 - conserved protein of unknown function, at 1,966,345 to 1,967,130 _1762 PP_1763: PP_1763 - putative oxidoreductase, at 1,967,249 to 1,967,989 _1763 Position (kb) 1963 1964 1965 1966 1967Strain fitness (log2 ratio) -1 0 1at 1962.990 kb on + strand, within PP_1760at 1962.990 kb on + strand, within PP_1760at 1962.991 kb on - strand, within PP_1760at 1962.991 kb on - strand, within PP_1760at 1962.991 kb on - strand, within PP_1760at 1963.305 kb on + strand, within PP_1760at 1963.305 kb on + strand, within PP_1760at 1963.305 kb on + strand, within PP_1760at 1963.306 kb on - strand, within PP_1760at 1963.306 kb on - strand, within PP_1760at 1963.306 kb on - strand, within PP_1760at 1963.370 kb on + strand, within PP_1760at 1963.371 kb on - strand, within PP_1760at 1963.533 kb on + strandat 1963.533 kb on + strandat 1963.535 kb on + strandat 1963.535 kb on + strandat 1963.536 kb on - strandat 1963.536 kb on - strandat 1963.547 kb on + strandat 1963.548 kb on - strandat 1963.727 kb on + strandat 1963.727 kb on + strandat 1963.727 kb on + strandat 1963.738 kb on + strandat 1963.745 kb on + strandat 1963.828 kb on - strandat 1963.834 kb on + strandat 1963.834 kb on + strandat 1963.960 kb on + strandat 1963.961 kb on - strandat 1963.962 kb on + strandat 1963.962 kb on + strandat 1963.962 kb on + strandat 1963.962 kb on + strandat 1963.962 kb on + strandat 1963.962 kb on + strandat 1963.962 kb on + strandat 1963.963 kb on - strandat 1963.963 kb on - strandat 1963.963 kb on - strandat 1963.984 kb on + strandat 1963.984 kb on + strandat 1963.985 kb on - strandat 1963.985 kb on - strandat 1963.985 kb on - strandat 1964.032 kb on + strandat 1964.032 kb on + strandat 1964.032 kb on + strandat 1964.032 kb on + strandat 1964.032 kb on + strandat 1964.032 kb on + strandat 1964.032 kb on + strandat 1964.032 kb on + strandat 1964.032 kb on + strandat 1964.033 kb on - strandat 1964.033 kb on - strandat 1964.033 kb on - strandat 1964.033 kb on - strandat 1964.035 kb on + strandat 1964.035 kb on + strandat 1964.035 kb on + strandat 1964.035 kb on + strandat 1964.047 kb on + strand, within PP_1761at 1964.048 kb on - strand, within PP_1761at 1964.097 kb on + strand, within PP_1761at 1964.251 kb on + strand, within PP_1761at 1964.273 kb on - strand, within PP_1761at 1964.293 kb on + strand, within PP_1761at 1964.293 kb on + strand, within PP_1761at 1964.294 kb on - strand, within PP_1761at 1964.294 kb on - strand, within PP_1761at 1964.312 kb on + strand, within PP_1761at 1964.312 kb on + strand, within PP_1761at 1964.313 kb on - strand, within PP_1761at 1964.313 kb on - strand, within PP_1761at 1964.313 kb on - strand, within PP_1761at 1964.634 kb on + strand, within PP_1761at 1964.634 kb on + strand, within PP_1761at 1964.635 kb on - strand, within PP_1761at 1964.635 kb on - strand, within PP_1761at 1964.656 kb on - strand, within PP_1761at 1964.662 kb on + strand, within PP_1761at 1964.857 kb on - strand, within PP_1761at 1964.877 kb on - strand, within PP_1761at 1964.877 kb on - strand, within PP_1761at 1964.919 kb on - strand, within PP_1761at 1964.953 kb on + strand, within PP_1761at 1964.953 kb on + strand, within PP_1761at 1964.954 kb on - strand, within PP_1761at 1964.954 kb on - strand, within PP_1761at 1964.954 kb on - strand, within PP_1761at 1964.954 kb on - strand, within PP_1761at 1965.314 kb on + strand, within PP_1761at 1965.315 kb on - strand, within PP_1761at 1965.356 kb on + strand, within PP_1761at 1965.356 kb on + strand, within PP_1761at 1965.421 kb on + strand, within PP_1761at 1965.421 kb on + strand, within PP_1761at 1965.421 kb on + strand, within PP_1761at 1965.421 kb on + strand, within PP_1761at 1965.422 kb on - strand, within PP_1761at 1965.422 kb on - strand, within PP_1761at 1965.422 kb on - strandat 1965.422 kb on - strand, within PP_1761at 1965.737 kb on + strand, within PP_1761at 1965.737 kb on + strand, within PP_1761at 1965.738 kb on - strand, within PP_1761at 1965.738 kb on - strand, within PP_1761at 1965.832 kb on + strand, within PP_1761at 1965.833 kb on - strand, within PP_1761at 1965.856 kb on + strand, within PP_1761at 1965.857 kb on - strand, within PP_1761at 1966.009 kb on + strand, within PP_1761at 1966.131 kb on + strandat 1966.132 kb on - strandat 1966.132 kb on - strandat 1966.190 kb on + strandat 1966.191 kb on - strandat 1966.213 kb on + strandat 1966.312 kb on + strandat 1966.313 kb on - strandat 1966.365 kb on + strandat 1966.466 kb on - strand, within PP_1762at 1966.466 kb on - strand, within PP_1762at 1966.514 kb on - strand, within PP_1762at 1966.555 kb on + strand, within PP_1762at 1966.556 kb on - strand, within PP_1762at 1966.556 kb on - strand, within PP_1762at 1966.556 kb on - strand, within PP_1762at 1966.556 kb on - strand, within PP_1762at 1966.585 kb on + strand, within PP_1762at 1966.663 kb on + strand, within PP_1762at 1966.663 kb on + strand, within PP_1762at 1966.664 kb on - strand, within PP_1762at 1966.810 kb on + strand, within PP_1762at 1966.810 kb on + strand, within PP_1762at 1966.811 kb on - strand, within PP_1762at 1966.867 kb on + strand, within PP_1762at 1966.868 kb on - strand, within PP_1762at 1966.868 kb on - strand, within PP_1762at 1966.868 kb on - strand, within PP_1762at 1966.868 kb on - strand, within PP_1762at 1966.868 kb on - strand, within PP_1762at 1966.868 kb on - strand, within PP_1762at 1966.868 kb on - strand, within PP_1762at 1966.933 kb on + strand, within PP_1762at 1966.934 kb on - strand, within PP_1762at 1966.934 kb on - strand, within PP_1762at 1966.974 kb on + strand, within PP_1762at 1966.975 kb on - strand, within PP_1762at 1966.975 kb on - strand, within PP_1762at 1967.041 kb on + strand, within PP_1762at 1967.042 kb on - strand, within PP_1762at 1967.104 kb on - strandat 1967.250 kb on + strandat 1967.304 kb on + strandat 1967.305 kb on - strandat 1967.310 kb on + strandat 1967.310 kb on + strandat 1967.311 kb on - strandat 1967.311 kb on - strandat 1967.311 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1,3-Butandiol (C)
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1,962,990 + PP_1760 0.68 -0.1
1,962,990 + PP_1760 0.68 -0.9
1,962,991 - PP_1760 0.68 -0.6
1,962,991 - PP_1760 0.68 +0.1
1,962,991 - PP_1760 0.68 +0.1
1,963,305 + PP_1760 0.85 +0.2
1,963,305 + PP_1760 0.85 -0.0
1,963,305 + PP_1760 0.85 -0.0
1,963,306 - PP_1760 0.86 +0.2
1,963,306 - PP_1760 0.86 +0.7
1,963,306 - PP_1760 0.86 +0.4
1,963,370 + PP_1760 0.89 +0.2
1,963,371 - PP_1760 0.89 +0.1
1,963,533 + +0.8
1,963,533 + -0.2
1,963,535 + -0.2
1,963,535 + +0.4
1,963,536 - -0.3
1,963,536 - +1.5
1,963,547 + +0.0
1,963,548 - -0.8
1,963,727 + +0.4
1,963,727 + +0.3
1,963,727 + -0.0
1,963,738 + -0.9
1,963,745 + +0.2
1,963,828 - +0.8
1,963,834 + +0.2
1,963,834 + +0.2
1,963,960 + +0.6
1,963,961 - +1.1
1,963,962 + +0.9
1,963,962 + +0.7
1,963,962 + +0.3
1,963,962 + +1.6
1,963,962 + +0.2
1,963,962 + +1.3
1,963,962 + +1.0
1,963,963 - +0.7
1,963,963 - +0.2
1,963,963 - +0.6
1,963,984 + +0.6
1,963,984 + +0.4
1,963,985 - +0.8
1,963,985 - -0.2
1,963,985 - +0.6
1,964,032 + -0.9
1,964,032 + +1.1
1,964,032 + -0.3
1,964,032 + +0.5
1,964,032 + +0.3
1,964,032 + +1.0
1,964,032 + +1.1
1,964,032 + -0.3
1,964,032 + +0.9
1,964,033 - +0.4
1,964,033 - +0.4
1,964,033 - -0.1
1,964,033 - +0.5
1,964,035 + +0.5
1,964,035 + -0.2
1,964,035 + +0.7
1,964,035 + +0.0
1,964,047 + PP_1761 0.10 +0.3
1,964,048 - PP_1761 0.10 +0.5
1,964,097 + PP_1761 0.12 -0.3
1,964,251 + PP_1761 0.18 +0.8
1,964,273 - PP_1761 0.19 +0.2
1,964,293 + PP_1761 0.20 +0.4
1,964,293 + PP_1761 0.20 +0.4
1,964,294 - PP_1761 0.20 +0.7
1,964,294 - PP_1761 0.20 +0.2
1,964,312 + PP_1761 0.21 +1.0
1,964,312 + PP_1761 0.21 +0.6
1,964,313 - PP_1761 0.21 +0.8
1,964,313 - PP_1761 0.21 +0.8
1,964,313 - PP_1761 0.21 -0.2
1,964,634 + PP_1761 0.33 -0.3
1,964,634 + PP_1761 0.33 +1.5
1,964,635 - PP_1761 0.33 -0.1
1,964,635 - PP_1761 0.33 +0.1
1,964,656 - PP_1761 0.34 +1.0
1,964,662 + PP_1761 0.35 +0.4
1,964,857 - PP_1761 0.42 +0.3
1,964,877 - PP_1761 0.43 +0.4
1,964,877 - PP_1761 0.43 +0.5
1,964,919 - PP_1761 0.45 +0.4
1,964,953 + PP_1761 0.46 -0.1
1,964,953 + PP_1761 0.46 -0.3
1,964,954 - PP_1761 0.46 +0.8
1,964,954 - PP_1761 0.46 +0.4
1,964,954 - PP_1761 0.46 -0.7
1,964,954 - PP_1761 0.46 +0.0
1,965,314 + PP_1761 0.60 +1.2
1,965,315 - PP_1761 0.60 +0.3
1,965,356 + PP_1761 0.62 +0.6
1,965,356 + PP_1761 0.62 -0.3
1,965,421 + PP_1761 0.65 +0.6
1,965,421 + PP_1761 0.65 -1.1
1,965,421 + PP_1761 0.65 +0.5
1,965,421 + PP_1761 0.65 +0.6
1,965,422 - PP_1761 0.65 +0.5
1,965,422 - PP_1761 0.65 -0.2
1,965,422 - +0.5
1,965,422 - PP_1761 0.65 +0.4
1,965,737 + PP_1761 0.77 +0.5
1,965,737 + PP_1761 0.77 +0.5
1,965,738 - PP_1761 0.77 +0.1
1,965,738 - PP_1761 0.77 +0.7
1,965,832 + PP_1761 0.81 +0.5
1,965,833 - PP_1761 0.81 +0.9
1,965,856 + PP_1761 0.82 +0.0
1,965,857 - PP_1761 0.82 +0.4
1,966,009 + PP_1761 0.88 -0.1
1,966,131 + -0.3
1,966,132 - +1.0
1,966,132 - -0.1
1,966,190 + +0.1
1,966,191 - +0.0
1,966,213 + +1.0
1,966,312 + +0.5
1,966,313 - +0.3
1,966,365 + +0.7
1,966,466 - PP_1762 0.15 -0.2
1,966,466 - PP_1762 0.15 +0.7
1,966,514 - PP_1762 0.22 -1.1
1,966,555 + PP_1762 0.27 +1.1
1,966,556 - PP_1762 0.27 -0.2
1,966,556 - PP_1762 0.27 +0.6
1,966,556 - PP_1762 0.27 +0.2
1,966,556 - PP_1762 0.27 -0.3
1,966,585 + PP_1762 0.31 +0.0
1,966,663 + PP_1762 0.40 +0.5
1,966,663 + PP_1762 0.40 +0.2
1,966,664 - PP_1762 0.41 -0.4
1,966,810 + PP_1762 0.59 +0.1
1,966,810 + PP_1762 0.59 -0.2
1,966,811 - PP_1762 0.59 -0.6
1,966,867 + PP_1762 0.66 +0.1
1,966,868 - PP_1762 0.67 -0.2
1,966,868 - PP_1762 0.67 +0.1
1,966,868 - PP_1762 0.67 +0.6
1,966,868 - PP_1762 0.67 -0.6
1,966,868 - PP_1762 0.67 -0.1
1,966,868 - PP_1762 0.67 +0.7
1,966,868 - PP_1762 0.67 -0.1
1,966,933 + PP_1762 0.75 -1.2
1,966,934 - PP_1762 0.75 -0.5
1,966,934 - PP_1762 0.75 +0.1
1,966,974 + PP_1762 0.80 -0.3
1,966,975 - PP_1762 0.80 -0.7
1,966,975 - PP_1762 0.80 +0.3
1,967,041 + PP_1762 0.89 +0.1
1,967,042 - PP_1762 0.89 +0.4
1,967,104 - -0.0
1,967,250 + -0.0
1,967,304 + +0.3
1,967,305 - -0.3
1,967,310 + +0.3
1,967,310 + -0.2
1,967,311 - +0.5
1,967,311 - -0.1
1,967,311 - +0.5

Or see this region's nucleotide sequence