Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14500

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
3,254,702	-		HGI48_RS14490	0.61	-0.5
3,254,722	+				-1.9
3,254,723	-		HGI48_RS14490	0.67	-0.6
3,254,723	-		HGI48_RS14490	0.67	-1.8
3,254,723	-		HGI48_RS14490	0.67	-0.9
3,254,778	+		HGI48_RS14490	0.83	+1.0
3,254,812	+				+0.0
3,254,812	+				-0.9
3,254,812	+				-0.4
3,254,813	-				-1.2
3,254,813	-				-0.6
3,254,813	-				+0.6
3,254,813	-				-1.2
3,254,813	-				+0.8
3,254,848	+				-1.2
3,254,849	-				-1.0
3,254,897	+				+1.9
3,254,898	-				+0.4
3,254,898	-				-0.7
3,254,997	+		HGI48_RS14495	0.17	+0.9
3,254,997	+		HGI48_RS14495	0.17	+2.3
3,254,997	+		HGI48_RS14495	0.17	-1.4
3,254,997	+		HGI48_RS14495	0.17	-0.3
3,254,997	+		HGI48_RS14495	0.17	-1.2
3,254,997	+		HGI48_RS14495	0.17	+0.2
3,254,998	-		HGI48_RS14495	0.17	-2.9
3,254,998	-		HGI48_RS14495	0.17	+0.4
3,254,998	-		HGI48_RS14495	0.17	-0.6
3,255,016	+				+0.6
3,255,082	+		HGI48_RS14495	0.29	-2.8
3,255,465	+		HGI48_RS14495	0.86	-1.4
3,255,465	+		HGI48_RS14495	0.86	+0.1
3,255,465	+		HGI48_RS14495	0.86	-0.9
3,255,465	+		HGI48_RS14495	0.86	-2.6
3,255,465	+		HGI48_RS14495	0.86	+0.8
3,255,465	+		HGI48_RS14495	0.86	-0.4
3,255,466	-		HGI48_RS14495	0.86	-0.7
3,255,466	-		HGI48_RS14495	0.86	-2.7
3,255,466	-		HGI48_RS14495	0.86	-0.9
3,255,468	+				-1.7
3,255,469	-		HGI48_RS14495	0.87	+1.0
3,255,540	-				-0.9
3,255,542	+				-0.5
3,255,542	+				-0.9
3,255,542	+				+0.2
3,255,542	+				-1.5
3,255,542	+				+2.0
3,255,543	-				+0.1
3,255,543	-				-0.9
3,255,543	-				-2.8
3,255,543	-				-0.6
3,255,543	-				+0.7
3,255,551	+				+1.4
3,255,596	+				-1.7
3,255,597	-				-1.0
3,255,601	+				+0.7
3,255,601	+				+0.2
3,255,602	-				+1.7
3,255,602	-				-0.9
3,255,602	-				-1.0
3,255,624	+				-1.0
3,255,624	+				+1.4
3,255,659	-				-0.2
3,255,666	+				-2.0
3,255,666	+				-0.5
3,255,666	+				+1.2
3,255,667	-				+2.8
3,255,678	-				-1.2
3,255,733	+				-0.8
3,255,734	-				+0.2
3,255,763	-				-0.6
3,255,934	+		HGI48_RS14500	0.22	-2.4
3,255,934	+				-0.2
3,255,939	+		HGI48_RS14500	0.22	-0.1
3,255,940	-		HGI48_RS14500	0.22	+0.0
3,255,940	-		HGI48_RS14500	0.22	+1.1
3,255,940	-		HGI48_RS14500	0.22	-1.2
3,255,940	-		HGI48_RS14500	0.22	+0.4
3,255,940	-		HGI48_RS14500	0.22	-2.5
3,256,009	+		HGI48_RS14500	0.27	-0.7
3,256,158	+		HGI48_RS14500	0.38	-1.4
3,256,158	+				-0.9
3,256,158	+		HGI48_RS14500	0.38	+0.8
3,256,158	+				+0.2
3,256,159	-		HGI48_RS14500	0.38	-1.7
3,256,159	-		HGI48_RS14500	0.38	-0.4
3,256,183	+		HGI48_RS14500	0.39	+0.9
3,256,183	+		HGI48_RS14500	0.39	+0.6
3,256,183	+		HGI48_RS14500	0.39	-1.5
3,256,183	+				-0.4
3,256,183	+				-1.4
3,256,183	+		HGI48_RS14500	0.39	+0.0
3,256,183	+				-1.6
3,256,184	-		HGI48_RS14500	0.40	-0.6
3,256,184	-		HGI48_RS14500	0.40	+0.0
3,256,186	-		HGI48_RS14500	0.40	-0.2
3,256,186	-		HGI48_RS14500	0.40	-0.6
3,256,186	-				+0.1
3,256,186	-		HGI48_RS14500	0.40	-1.7
3,256,225	+		HGI48_RS14500	0.42	+2.0
3,256,226	-		HGI48_RS14500	0.42	-0.2
3,256,246	+		HGI48_RS14500	0.44	-1.5
3,256,247	-		HGI48_RS14500	0.44	-0.2
3,256,247	-		HGI48_RS14500	0.44	-1.2
3,256,281	+		HGI48_RS14500	0.46	-0.9
3,256,281	+		HGI48_RS14500	0.46	-2.2
3,256,281	+				-1.2
3,256,281	+		HGI48_RS14500	0.46	+0.9
3,256,281	+		HGI48_RS14500	0.46	-1.9
3,256,281	+		HGI48_RS14500	0.46	+0.1
3,256,282	-		HGI48_RS14500	0.46	-0.3
3,256,282	-		HGI48_RS14500	0.46	+0.5
3,256,511	+		HGI48_RS14500	0.63	-0.6
3,256,558	-		HGI48_RS14500	0.66	-2.0
3,256,902	+				+0.4
3,256,931	+				-0.8
3,256,931	+				-0.7
3,257,012	+				-1.9
3,257,012	+				-0.7
3,257,012	+				-2.6
3,257,047	+				+0.0
3,257,047	+				+2.0
3,257,048	-				+1.7
3,257,048	-				-0.6
3,257,058	+				-0.0
3,257,153	+				+1.0
3,257,166	-				+0.4
3,257,197	+				-0.4
3,257,212	-				-0.6
3,257,261	+				+1.1
3,257,271	+				+0.7
3,257,520	-				-1.2
3,257,593	+		HGI48_RS14505	0.40	-2.6
3,257,594	-		HGI48_RS14505	0.40	-2.3
3,257,614	-		HGI48_RS14505	0.42	-0.9
3,257,620	+		HGI48_RS14505	0.43	-0.2
3,257,620	+		HGI48_RS14505	0.43	-1.4
3,257,620	+		HGI48_RS14505	0.43	+0.0
3,257,620	+		HGI48_RS14505	0.43	-0.9
3,257,620	+		HGI48_RS14505	0.43	+0.0
3,257,621	-		HGI48_RS14505	0.43	-1.4
3,257,621	-		HGI48_RS14505	0.43	+1.4
3,257,621	-		HGI48_RS14505	0.43	-0.1
3,257,621	-		HGI48_RS14505	0.43	-0.9
3,257,621	-		HGI48_RS14505	0.43	-0.1
3,257,621	-		HGI48_RS14505	0.43	+1.0
3,257,625	-		HGI48_RS14505	0.44	-1.4
3,257,647	-		HGI48_RS14505	0.46	-0.5
3,257,647	-		HGI48_RS14505	0.46	-0.2
3,257,656	+				-1.2
3,257,656	+		HGI48_RS14505	0.47	-1.2
3,257,656	+		HGI48_RS14505	0.47	+4.2
3,257,656	+		HGI48_RS14505	0.47	+0.6
3,257,723	-		HGI48_RS14505	0.55	-0.7
3,257,811	+		HGI48_RS14505	0.64	+0.6
3,257,812	-		HGI48_RS14505	0.65	-1.0
3,257,812	-		HGI48_RS14505	0.65	+0.0
3,257,812	-				-1.2
3,257,847	-		HGI48_RS14505	0.68	-0.6
3,257,920	+		HGI48_RS14505	0.77	+1.8
3,257,920	+		HGI48_RS14505	0.77	+0.4
3,257,920	+		HGI48_RS14505	0.77	-0.3
3,257,920	+				+1.1
3,257,921	-		HGI48_RS14505	0.77	-2.2
3,257,921	-		HGI48_RS14505	0.77	+1.0
3,257,958	+		HGI48_RS14505	0.81	+0.4
3,257,958	+		HGI48_RS14505	0.81	-1.2
3,257,967	-		HGI48_RS14505	0.82	+0.3
3,257,967	-		HGI48_RS14505	0.82	-1.6
3,257,967	-		HGI48_RS14505	0.82	+0.4
3,257,973	+		HGI48_RS14505	0.83	+0.1
3,257,973	+		HGI48_RS14505	0.83	-0.1
3,257,973	+		HGI48_RS14505	0.83	-1.6
3,257,973	+		HGI48_RS14505	0.83	+0.4
3,257,973	+		HGI48_RS14505	0.83	-0.2
3,257,973	+		HGI48_RS14505	0.83	-1.7
3,257,974	-		HGI48_RS14505	0.83	-1.6
3,257,975	+		HGI48_RS14505	0.83	-0.2
3,257,975	+		HGI48_RS14505	0.83	+1.8
3,257,975	+		HGI48_RS14505	0.83	-1.4
3,257,975	+		HGI48_RS14505	0.83	+0.3
3,257,976	-		HGI48_RS14505	0.83	+1.0
3,257,976	-		HGI48_RS14505	0.83	-2.6
3,258,033	+		HGI48_RS14505	0.89	+1.0
3,258,036	+		HGI48_RS14505	0.90	+0.0
3,258,036	+		HGI48_RS14505	0.90	+2.2
3,258,037	-		HGI48_RS14505	0.90	+0.7
3,258,037	-		HGI48_RS14505	0.90	+0.0
3,258,041	-				+1.1
3,258,041	-				-0.6