Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS10815

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
2,342,480	+				-1.2
2,342,481	-				-1.6
2,342,499	+				+0.7
2,342,500	-				-0.6
2,342,500	-				+0.1
2,342,516	+				-1.9
2,342,516	+				+1.5
2,342,516	+				-0.5
2,342,517	-				-1.5
2,342,517	-				-0.5
2,342,531	+				-0.3
2,342,531	+				-0.2
2,342,532	-				+0.7
2,342,565	-				+0.0
2,342,584	+				-1.3
2,342,590	+				-1.0
2,342,590	+				+1.1
2,342,661	+				+0.1
2,342,717	-				-1.5
2,342,761	+				-1.0
2,342,762	-				+1.5
2,342,815	+				+1.5
2,342,815	+				+2.9
2,342,816	-				+0.4
2,342,904	+				+0.5
2,342,905	-				-1.3
2,343,176	-		HGI48_RS10810	0.61	-0.0
2,343,220	+		HGI48_RS10810	0.70	+1.8
2,343,473	-				+3.0
2,343,504	+				-1.2
2,343,535	-		HGI48_RS10815	0.10	+1.3
2,343,651	+		HGI48_RS10815	0.16	+0.0
2,343,651	+		HGI48_RS10815	0.16	-1.2
2,343,651	+		HGI48_RS10815	0.16	-0.1
2,343,651	+		HGI48_RS10815	0.16	-0.5
2,343,686	+		HGI48_RS10815	0.18	-0.6
2,343,686	+		HGI48_RS10815	0.18	-0.9
2,343,686	+		HGI48_RS10815	0.18	-1.9
2,343,687	-		HGI48_RS10815	0.18	-2.3
2,343,691	-		HGI48_RS10815	0.18	-2.3
2,343,691	-		HGI48_RS10815	0.18	-1.9
2,343,691	-		HGI48_RS10815	0.18	+0.5
2,343,691	-		HGI48_RS10815	0.18	-1.2
2,343,807	+		HGI48_RS10815	0.25	+0.6
2,343,808	-				+0.5
2,343,808	-		HGI48_RS10815	0.25	+0.4
2,343,809	+		HGI48_RS10815	0.25	-1.0
2,343,809	+		HGI48_RS10815	0.25	-2.2
2,343,810	-		HGI48_RS10815	0.25	-1.2
2,343,810	-		HGI48_RS10815	0.25	-1.5
2,343,843	+				-0.2
2,343,882	+		HGI48_RS10815	0.29	+1.5
2,343,882	+		HGI48_RS10815	0.29	+2.2
2,343,882	+		HGI48_RS10815	0.29	-0.7
2,343,882	+		HGI48_RS10815	0.29	+0.7
2,343,882	+		HGI48_RS10815	0.29	-0.1
2,343,883	-		HGI48_RS10815	0.29	-0.5
2,343,883	-		HGI48_RS10815	0.29	+1.4
2,343,883	-		HGI48_RS10815	0.29	-2.0
2,343,883	-		HGI48_RS10815	0.29	-1.5
2,343,909	+		HGI48_RS10815	0.30	-1.0
2,343,909	+		HGI48_RS10815	0.30	+0.1
2,343,910	-		HGI48_RS10815	0.30	-1.5
2,343,910	-		HGI48_RS10815	0.30	+0.5
2,344,005	-		HGI48_RS10815	0.36	+1.1
2,344,232	+		HGI48_RS10815	0.48	+1.5
2,344,332	+		HGI48_RS10815	0.53	-1.9
2,344,332	+		HGI48_RS10815	0.53	-1.5
2,344,332	+		HGI48_RS10815	0.53	+0.8
2,344,332	+		HGI48_RS10815	0.53	+0.1
2,344,332	+		HGI48_RS10815	0.53	-0.7
2,344,332	+		HGI48_RS10815	0.53	+1.7
2,344,333	-		HGI48_RS10815	0.53	-0.6
2,344,333	-		HGI48_RS10815	0.53	+2.0
2,344,333	-		HGI48_RS10815	0.53	+0.6
2,344,333	-		HGI48_RS10815	0.53	+0.1
2,344,333	-		HGI48_RS10815	0.53	-0.2
2,344,353	+		HGI48_RS10815	0.54	+0.1
2,344,353	+		HGI48_RS10815	0.54	-0.9
2,344,353	+		HGI48_RS10815	0.54	-0.5
2,344,353	+		HGI48_RS10815	0.54	-2.0
2,344,353	+		HGI48_RS10815	0.54	-1.5
2,344,353	+		HGI48_RS10815	0.54	-0.5
2,344,354	-				-2.7
2,344,354	-		HGI48_RS10815	0.55	-2.7
2,344,354	-		HGI48_RS10815	0.55	+0.4
2,344,354	-		HGI48_RS10815	0.55	-0.5
2,344,354	-		HGI48_RS10815	0.55	-2.0
2,344,618	+		HGI48_RS10815	0.69	-0.2
2,344,618	+		HGI48_RS10815	0.69	-0.1
2,344,618	+				+0.1
2,344,618	+		HGI48_RS10815	0.69	+1.1
2,344,618	+		HGI48_RS10815	0.69	-1.7
2,344,618	+				-0.0
2,344,618	+		HGI48_RS10815	0.69	+0.8
2,344,619	-		HGI48_RS10815	0.69	-0.5
2,344,619	-		HGI48_RS10815	0.69	-1.0
2,344,619	-				-0.9
2,344,619	-		HGI48_RS10815	0.69	+0.8
2,344,619	-		HGI48_RS10815	0.69	+1.1
2,344,620	+				-1.7
2,344,620	+		HGI48_RS10815	0.69	+0.6
2,344,620	+		HGI48_RS10815	0.69	+0.8
2,344,620	+		HGI48_RS10815	0.69	-1.3
2,344,620	+		HGI48_RS10815	0.69	+0.3
2,344,620	+		HGI48_RS10815	0.69	-0.1
2,344,621	-		HGI48_RS10815	0.69	-0.4
2,344,621	-		HGI48_RS10815	0.69	+0.4
2,344,621	-		HGI48_RS10815	0.69	-1.7
2,344,621	-		HGI48_RS10815	0.69	+1.0
2,344,621	-		HGI48_RS10815	0.69	+0.5
2,344,621	-		HGI48_RS10815	0.69	-1.2
2,344,621	-				-1.5
2,344,621	-		HGI48_RS10815	0.69	+2.0
2,344,621	-		HGI48_RS10815	0.69	-0.7
2,344,792	-		HGI48_RS10815	0.78	-1.2
2,344,809	+		HGI48_RS10815	0.79	+2.7
2,344,810	-		HGI48_RS10815	0.79	+1.7
2,344,810	-		HGI48_RS10815	0.79	+0.4
2,344,824	+		HGI48_RS10815	0.80	+0.9
2,344,824	+		HGI48_RS10815	0.80	+0.8
2,344,824	+		HGI48_RS10815	0.80	-2.2
2,344,825	-		HGI48_RS10815	0.80	-0.7
2,344,825	-		HGI48_RS10815	0.80	+0.1
2,344,905	+		HGI48_RS10815	0.85	-1.2
2,344,906	-		HGI48_RS10815	0.85	-0.9
2,344,926	+		HGI48_RS10815	0.86	-1.3
2,344,927	-		HGI48_RS10815	0.86	+1.2
2,345,048	+				-1.5
2,345,049	-				-0.6
2,345,049	-				-0.9
2,345,049	-				-1.2
2,345,059	-				-0.0
2,345,078	+				+0.5
2,345,078	+				+1.0
2,345,078	+				-1.5
2,345,079	-				-0.1
2,345,079	-				+0.1
2,345,079	-				-0.5
2,345,079	-				+1.0
2,345,131	+				-0.5
2,345,246	+				-0.7
2,345,247	-				-0.0
2,345,247	-				+0.6
2,345,251	-				+0.1
2,345,256	+				-1.2
2,345,260	+				-1.1
2,345,261	-				-2.1
2,345,261	-				+3.1
2,345,289	-				-1.2
2,345,299	-				+1.1
2,345,299	-				+0.9
2,345,299	-				-0.7
2,345,313	-				-1.7
2,345,313	-				-0.0
2,345,365	+				-1.5
2,345,370	+				-0.5
2,345,370	+				-2.0
2,345,370	+				+0.1
2,345,370	+				+0.1
2,345,386	-				-1.5
2,345,406	-				-2.2
2,345,423	+				+0.5
2,345,468	-		HGI48_RS10820	0.10	-2.2
2,345,482	+		HGI48_RS10820	0.11	-0.2
2,345,484	+		HGI48_RS10820	0.11	+1.5
2,345,484	+		HGI48_RS10820	0.11	-1.2
2,345,485	-		HGI48_RS10820	0.12	+1.9
2,345,499	+		HGI48_RS10820	0.12	+1.2
2,345,678	+		HGI48_RS10820	0.24	+0.6
2,345,678	+				-1.7
2,345,702	+				-0.5
2,345,702	+		HGI48_RS10820	0.25	-1.2
2,345,702	+		HGI48_RS10820	0.25	+0.9
2,345,702	+		HGI48_RS10820	0.25	-1.6
2,345,702	+		HGI48_RS10820	0.25	+0.1
2,345,703	-		HGI48_RS10820	0.26	+1.1
2,345,734	+		HGI48_RS10820	0.28	+0.1
2,345,734	+		HGI48_RS10820	0.28	-1.7
2,345,734	+		HGI48_RS10820	0.28	-2.7
2,345,735	-		HGI48_RS10820	0.28	+0.6
2,345,735	-		HGI48_RS10820	0.28	+0.7
2,345,735	-		HGI48_RS10820	0.28	-0.2
2,345,791	+		HGI48_RS10820	0.31	+0.4
2,345,791	+		HGI48_RS10820	0.31	-0.5
2,345,792	-		HGI48_RS10820	0.31	-1.4
2,345,792	-		HGI48_RS10820	0.31	-1.7
2,345,794	+		HGI48_RS10820	0.31	-1.9
2,345,794	+		HGI48_RS10820	0.31	+0.6
2,345,794	+		HGI48_RS10820	0.31	-1.6
2,345,794	+		HGI48_RS10820	0.31	-1.2
2,345,794	+		HGI48_RS10820	0.31	-1.5
2,345,794	+		HGI48_RS10820	0.31	-0.0
2,345,794	+		HGI48_RS10820	0.31	+1.1
2,345,795	-		HGI48_RS10820	0.31	+0.9
2,345,795	-		HGI48_RS10820	0.31	+1.7
2,345,795	-		HGI48_RS10820	0.31	-3.2
2,345,795	-		HGI48_RS10820	0.31	-0.6
2,345,795	-		HGI48_RS10820	0.31	-1.9
2,345,795	-		HGI48_RS10820	0.31	-0.4
2,345,800	+		HGI48_RS10820	0.32	+0.3
2,345,800	+		HGI48_RS10820	0.32	-1.2
2,345,800	+		HGI48_RS10820	0.32	+0.3
2,345,801	-		HGI48_RS10820	0.32	-0.9
2,345,801	-		HGI48_RS10820	0.32	-0.7
2,345,801	-		HGI48_RS10820	0.32	+0.7
2,345,997	+		HGI48_RS10820	0.44	+0.4
2,345,998	-		HGI48_RS10820	0.45	-2.6
2,345,998	-		HGI48_RS10820	0.45	+1.7
2,346,031	+		HGI48_RS10820	0.47	-1.7
2,346,052	+		HGI48_RS10820	0.48	+1.5
2,346,067	+				+1.6
2,346,067	+		HGI48_RS10820	0.49	+1.1
2,346,067	+		HGI48_RS10820	0.49	-0.0
2,346,067	+				+0.4
2,346,067	+		HGI48_RS10820	0.49	+0.7
2,346,067	+		HGI48_RS10820	0.49	-1.2
2,346,068	-		HGI48_RS10820	0.49	-0.7
2,346,068	-		HGI48_RS10820	0.49	+0.1
2,346,068	-		HGI48_RS10820	0.49	-0.1
2,346,068	-		HGI48_RS10820	0.49	-0.1
2,346,068	-		HGI48_RS10820	0.49	+0.5
2,346,068	-				-0.9
2,346,068	-		HGI48_RS10820	0.49	-1.0
2,346,068	-		HGI48_RS10820	0.49	-0.4
2,346,068	-				+1.5
2,346,068	-		HGI48_RS10820	0.49	+0.0
2,346,068	-		HGI48_RS10820	0.49	+1.7