Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04135

Experiment: M9+polygalacturonate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS04130 and HGI48_RS04135 are separated by 139 nucleotidesHGI48_RS04135 and HGI48_RS04140 are separated by 2 nucleotides HGI48_RS04130: HGI48_RS04130 - transposase, at 874,756 to 875,326 _RS04130 HGI48_RS04135: HGI48_RS04135 - carboxymuconolactone decarboxylase family protein, at 875,466 to 875,657 _RS04135 HGI48_RS04140: HGI48_RS04140 - IS3 family transposase, at 875,660 to 876,811 _RS04140 Position (kb) 875 876Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 874.515 kb on + strandat 874.588 kb on - strandat 874.588 kb on - strandat 874.591 kb on + strandat 874.607 kb on + strandat 874.610 kb on + strandat 874.611 kb on - strandat 874.611 kb on - strandat 874.611 kb on - strandat 874.611 kb on - strandat 874.611 kb on - strandat 874.611 kb on - strandat 874.688 kb on + strandat 874.688 kb on + strandat 874.713 kb on - strandat 874.713 kb on - strandat 874.713 kb on - strandat 874.765 kb on - strandat 874.765 kb on - strandat 874.847 kb on + strand, within HGI48_RS04130at 874.885 kb on + strand, within HGI48_RS04130at 874.885 kb on + strand, within HGI48_RS04130at 874.885 kb on + strand, within HGI48_RS04130at 874.885 kb on + strand, within HGI48_RS04130at 874.886 kb on - strand, within HGI48_RS04130at 874.892 kb on + strand, within HGI48_RS04130at 874.893 kb on - strand, within HGI48_RS04130at 874.893 kb on - strand, within HGI48_RS04130at 874.893 kb on - strand, within HGI48_RS04130at 874.925 kb on + strand, within HGI48_RS04130at 874.925 kb on + strand, within HGI48_RS04130at 874.925 kb on + strand, within HGI48_RS04130at 874.925 kb on + strand, within HGI48_RS04130at 874.925 kb on + strand, within HGI48_RS04130at 874.926 kb on - strand, within HGI48_RS04130at 874.926 kb on - strand, within HGI48_RS04130at 875.000 kb on + strand, within HGI48_RS04130at 875.100 kb on - strand, within HGI48_RS04130at 875.134 kb on - strand, within HGI48_RS04130at 875.134 kb on - strand, within HGI48_RS04130at 875.134 kb on - strand, within HGI48_RS04130at 875.218 kb on + strand, within HGI48_RS04130at 875.218 kb on + strand, within HGI48_RS04130at 875.219 kb on - strand, within HGI48_RS04130at 875.286 kb on + strandat 875.286 kb on + strandat 875.286 kb on + strandat 875.287 kb on - strandat 875.287 kb on - strandat 875.287 kb on - strandat 875.287 kb on - strandat 875.383 kb on + strandat 875.384 kb on - strandat 875.389 kb on + strandat 875.406 kb on + strandat 875.406 kb on + strandat 875.406 kb on + strandat 875.407 kb on - strandat 875.407 kb on - strandat 875.407 kb on - strandat 875.407 kb on - strandat 875.425 kb on - strandat 875.431 kb on + strandat 875.442 kb on + strandat 875.442 kb on + strandat 875.462 kb on + strandat 875.467 kb on + strandat 875.468 kb on - strandat 875.468 kb on - strandat 875.472 kb on - strandat 875.472 kb on - strandat 875.472 kb on - strandat 875.474 kb on + strandat 875.512 kb on + strand, within HGI48_RS04135at 875.513 kb on - strand, within HGI48_RS04135at 875.513 kb on - strand, within HGI48_RS04135at 875.513 kb on - strand, within HGI48_RS04135at 875.517 kb on + strand, within HGI48_RS04135at 875.518 kb on - strand, within HGI48_RS04135at 875.540 kb on + strand, within HGI48_RS04135at 875.593 kb on - strand, within HGI48_RS04135at 875.593 kb on - strand, within HGI48_RS04135at 875.606 kb on + strand, within HGI48_RS04135at 875.616 kb on + strand, within HGI48_RS04135at 875.617 kb on - strand, within HGI48_RS04135at 875.617 kb on - strand, within HGI48_RS04135at 875.617 kb on - strandat 875.637 kb on - strand, within HGI48_RS04135at 875.645 kb on - strandat 875.645 kb on - strandat 875.645 kb on - strandat 875.645 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+polygalacturonate
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874,515 + -1.8
874,588 - -0.0
874,588 - -0.3
874,591 + -0.7
874,607 + +1.5
874,610 + -0.8
874,611 - +1.5
874,611 - +1.5
874,611 - -2.8
874,611 - +1.1
874,611 - -0.5
874,611 - -0.9
874,688 + +0.4
874,688 + -0.0
874,713 - +0.1
874,713 - +0.3
874,713 - +0.5
874,765 - +1.0
874,765 - +0.5
874,847 + HGI48_RS04130 0.16 +1.7
874,885 + HGI48_RS04130 0.23 +0.5
874,885 + HGI48_RS04130 0.23 -0.7
874,885 + HGI48_RS04130 0.23 +0.9
874,885 + HGI48_RS04130 0.23 -1.5
874,886 - HGI48_RS04130 0.23 +0.8
874,892 + HGI48_RS04130 0.24 -0.8
874,893 - HGI48_RS04130 0.24 +0.8
874,893 - HGI48_RS04130 0.24 -1.9
874,893 - HGI48_RS04130 0.24 -0.5
874,925 + HGI48_RS04130 0.30 -0.0
874,925 + HGI48_RS04130 0.30 +0.2
874,925 + HGI48_RS04130 0.30 -0.6
874,925 + HGI48_RS04130 0.30 -1.6
874,925 + HGI48_RS04130 0.30 +0.5
874,926 - HGI48_RS04130 0.30 +0.3
874,926 - HGI48_RS04130 0.30 +1.0
875,000 + HGI48_RS04130 0.43 +0.4
875,100 - HGI48_RS04130 0.60 +2.8
875,134 - HGI48_RS04130 0.66 -2.5
875,134 - HGI48_RS04130 0.66 -0.5
875,134 - HGI48_RS04130 0.66 +0.0
875,218 + HGI48_RS04130 0.81 -0.3
875,218 + HGI48_RS04130 0.81 -0.0
875,219 - HGI48_RS04130 0.81 -1.0
875,286 + +0.0
875,286 + -0.6
875,286 + -1.6
875,287 - +2.3
875,287 - +1.1
875,287 - -0.6
875,287 - +0.5
875,383 + -0.8
875,384 - -1.5
875,389 + +0.1
875,406 + -2.5
875,406 + +0.1
875,406 + -1.5
875,407 - +1.2
875,407 - -1.0
875,407 - -0.3
875,407 - -0.5
875,425 - -0.9
875,431 + -0.0
875,442 + +1.9
875,442 + -1.8
875,462 + -0.0
875,467 + +0.2
875,468 - -0.8
875,468 - -0.0
875,472 - -0.8
875,472 - +1.4
875,472 - -0.5
875,474 + -0.5
875,512 + HGI48_RS04135 0.24 -1.4
875,513 - HGI48_RS04135 0.24 -0.6
875,513 - HGI48_RS04135 0.24 +1.7
875,513 - HGI48_RS04135 0.24 -0.8
875,517 + HGI48_RS04135 0.27 +1.4
875,518 - HGI48_RS04135 0.27 -0.5
875,540 + HGI48_RS04135 0.39 -1.8
875,593 - HGI48_RS04135 0.66 +1.8
875,593 - HGI48_RS04135 0.66 +0.9
875,606 + HGI48_RS04135 0.73 +1.2
875,616 + HGI48_RS04135 0.78 +0.7
875,617 - HGI48_RS04135 0.79 +0.3
875,617 - HGI48_RS04135 0.79 -0.0
875,617 - -1.0
875,637 - HGI48_RS04135 0.89 +0.3
875,645 - -1.9
875,645 - -1.6
875,645 - -1.0
875,645 - +0.7

Or see this region's nucleotide sequence