Experiment: M9+polygalacturonate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03940 and HGI48_RS03945 overlap by 4 nucleotides HGI48_RS03945 and HGI48_RS03950 are separated by 25 nucleotides HGI48_RS03950 and HGI48_RS03955 are separated by 57 nucleotides HGI48_RS03955 and HGI48_RS03960 are separated by 14 nucleotides
HGI48_RS03940: HGI48_RS03940 - EexN family lipoprotein, at 837,056 to 837,331
_RS03940
HGI48_RS03945: HGI48_RS03945 - LysR family transcriptional regulator, at 837,328 to 838,272
_RS03945
HGI48_RS03950: HGI48_RS03950 - DUF2867 domain-containing protein, at 838,298 to 838,834
_RS03950
HGI48_RS03955: HGI48_RS03955 - arginase family protein, at 838,892 to 839,770
_RS03955
HGI48_RS03960: HGI48_RS03960 - alkene reductase, at 839,785 to 840,867
_RS03960
Position (kb) 838
839 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 837.464 kb on + strand, within HGI48_RS03945 at 837.464 kb on + strand, within HGI48_RS03945 at 837.464 kb on + strand, within HGI48_RS03945 at 837.464 kb on + strand, within HGI48_RS03945 at 837.464 kb on + strand, within HGI48_RS03945 at 837.464 kb on + strand, within HGI48_RS03945 at 837.464 kb on + strand, within HGI48_RS03945 at 837.464 kb on + strand at 837.464 kb on + strand at 837.465 kb on - strand, within HGI48_RS03945 at 837.465 kb on - strand at 837.465 kb on - strand, within HGI48_RS03945 at 837.465 kb on - strand, within HGI48_RS03945 at 837.477 kb on + strand, within HGI48_RS03945 at 837.477 kb on + strand, within HGI48_RS03945 at 837.477 kb on + strand, within HGI48_RS03945 at 837.477 kb on + strand, within HGI48_RS03945 at 837.478 kb on - strand, within HGI48_RS03945 at 837.478 kb on - strand, within HGI48_RS03945 at 837.478 kb on - strand at 837.478 kb on - strand, within HGI48_RS03945 at 837.478 kb on - strand, within HGI48_RS03945 at 837.478 kb on - strand, within HGI48_RS03945 at 837.478 kb on - strand, within HGI48_RS03945 at 837.478 kb on - strand, within HGI48_RS03945 at 837.516 kb on + strand at 837.542 kb on - strand, within HGI48_RS03945 at 837.694 kb on + strand, within HGI48_RS03945 at 837.694 kb on + strand, within HGI48_RS03945 at 837.694 kb on + strand, within HGI48_RS03945 at 837.694 kb on + strand, within HGI48_RS03945 at 837.695 kb on - strand, within HGI48_RS03945 at 837.793 kb on + strand, within HGI48_RS03945 at 837.794 kb on - strand, within HGI48_RS03945 at 837.845 kb on - strand, within HGI48_RS03945 at 837.845 kb on - strand, within HGI48_RS03945 at 837.845 kb on - strand at 837.851 kb on + strand, within HGI48_RS03945 at 837.851 kb on + strand, within HGI48_RS03945 at 837.852 kb on - strand, within HGI48_RS03945 at 838.132 kb on + strand, within HGI48_RS03945 at 838.132 kb on + strand, within HGI48_RS03945 at 838.132 kb on + strand, within HGI48_RS03945 at 838.133 kb on - strand, within HGI48_RS03945 at 838.133 kb on - strand, within HGI48_RS03945 at 838.133 kb on - strand at 838.133 kb on - strand, within HGI48_RS03945 at 838.264 kb on + strand at 838.264 kb on + strand at 838.264 kb on + strand at 838.264 kb on + strand at 838.264 kb on + strand at 838.264 kb on + strand at 838.264 kb on + strand at 838.265 kb on - strand at 838.265 kb on - strand at 838.265 kb on - strand at 838.265 kb on - strand at 838.273 kb on + strand at 838.274 kb on - strand at 838.299 kb on + strand at 838.380 kb on + strand, within HGI48_RS03950 at 838.380 kb on + strand, within HGI48_RS03950 at 838.380 kb on + strand, within HGI48_RS03950 at 838.380 kb on + strand, within HGI48_RS03950 at 838.381 kb on - strand, within HGI48_RS03950 at 838.381 kb on - strand at 838.381 kb on - strand, within HGI48_RS03950 at 838.381 kb on - strand, within HGI48_RS03950 at 838.381 kb on - strand, within HGI48_RS03950 at 838.381 kb on - strand, within HGI48_RS03950 at 838.381 kb on - strand, within HGI48_RS03950 at 838.381 kb on - strand at 838.430 kb on + strand, within HGI48_RS03950 at 838.430 kb on + strand, within HGI48_RS03950 at 838.430 kb on + strand, within HGI48_RS03950 at 838.431 kb on - strand, within HGI48_RS03950 at 838.431 kb on - strand, within HGI48_RS03950 at 838.431 kb on - strand, within HGI48_RS03950 at 838.431 kb on - strand, within HGI48_RS03950 at 838.431 kb on - strand, within HGI48_RS03950 at 838.431 kb on - strand, within HGI48_RS03950 at 838.431 kb on - strand, within HGI48_RS03950 at 838.431 kb on - strand, within HGI48_RS03950 at 838.437 kb on + strand, within HGI48_RS03950 at 838.437 kb on + strand, within HGI48_RS03950 at 838.437 kb on + strand, within HGI48_RS03950 at 838.438 kb on - strand, within HGI48_RS03950 at 838.569 kb on + strand, within HGI48_RS03950 at 838.570 kb on - strand, within HGI48_RS03950 at 838.742 kb on - strand, within HGI48_RS03950 at 838.846 kb on + strand at 838.847 kb on - strand at 838.847 kb on - strand at 838.875 kb on - strand at 838.875 kb on - strand at 838.875 kb on - strand at 838.985 kb on - strand, within HGI48_RS03955 at 839.095 kb on - strand, within HGI48_RS03955 at 839.228 kb on + strand, within HGI48_RS03955 at 839.228 kb on + strand, within HGI48_RS03955 at 839.228 kb on + strand, within HGI48_RS03955 at 839.228 kb on + strand, within HGI48_RS03955 at 839.229 kb on - strand, within HGI48_RS03955 at 839.229 kb on - strand, within HGI48_RS03955 at 839.452 kb on - strand, within HGI48_RS03955 at 839.466 kb on + strand, within HGI48_RS03955 at 839.510 kb on + strand, within HGI48_RS03955 at 839.510 kb on + strand, within HGI48_RS03955 at 839.511 kb on - strand, within HGI48_RS03955 at 839.511 kb on - strand, within HGI48_RS03955 at 839.681 kb on + strand, within HGI48_RS03955 at 839.682 kb on - strand, within HGI48_RS03955 at 839.682 kb on - strand, within HGI48_RS03955 at 839.697 kb on + strand at 839.698 kb on - strand at 839.698 kb on - strand at 839.698 kb on - strand at 839.698 kb on - strand at 839.698 kb on - strand at 839.698 kb on - strand at 839.698 kb on - strand at 839.700 kb on + strand at 839.700 kb on + strand at 839.700 kb on + strand at 839.700 kb on + strand at 839.700 kb on + strand at 839.700 kb on + strand at 839.700 kb on + strand at 839.700 kb on + strand at 839.700 kb on + strand at 839.700 kb on + strand at 839.701 kb on - strand at 839.755 kb on + strand at 839.755 kb on + strand at 839.798 kb on + strand at 839.798 kb on + strand at 839.816 kb on + strand at 839.816 kb on + strand at 839.817 kb on - strand at 839.817 kb on - strand at 839.817 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+polygalacturonate remove 837,464 + HGI48_RS03945 0.14 -0.8 837,464 + HGI48_RS03945 0.14 -1.3 837,464 + HGI48_RS03945 0.14 -1.3 837,464 + HGI48_RS03945 0.14 +1.5 837,464 + HGI48_RS03945 0.14 +3.2 837,464 + HGI48_RS03945 0.14 -0.9 837,464 + HGI48_RS03945 0.14 -2.3 837,464 + -1.0 837,464 + -1.0 837,465 - HGI48_RS03945 0.14 +0.2 837,465 - -1.0 837,465 - HGI48_RS03945 0.14 +1.5 837,465 - HGI48_RS03945 0.14 -0.3 837,477 + HGI48_RS03945 0.16 -1.3 837,477 + HGI48_RS03945 0.16 -0.5 837,477 + HGI48_RS03945 0.16 +1.0 837,477 + HGI48_RS03945 0.16 +0.2 837,478 - HGI48_RS03945 0.16 -1.2 837,478 - HGI48_RS03945 0.16 +1.2 837,478 - -1.5 837,478 - HGI48_RS03945 0.16 +0.4 837,478 - HGI48_RS03945 0.16 +0.5 837,478 - HGI48_RS03945 0.16 +0.5 837,478 - HGI48_RS03945 0.16 -0.6 837,478 - HGI48_RS03945 0.16 +0.7 837,516 + -0.0 837,542 - HGI48_RS03945 0.23 -1.3 837,694 + HGI48_RS03945 0.39 -1.3 837,694 + HGI48_RS03945 0.39 -1.6 837,694 + HGI48_RS03945 0.39 -1.4 837,694 + HGI48_RS03945 0.39 -1.6 837,695 - HGI48_RS03945 0.39 -1.0 837,793 + HGI48_RS03945 0.49 +1.2 837,794 - HGI48_RS03945 0.49 +0.6 837,845 - HGI48_RS03945 0.55 +0.2 837,845 - HGI48_RS03945 0.55 -0.0 837,845 - -1.0 837,851 + HGI48_RS03945 0.55 -2.5 837,851 + HGI48_RS03945 0.55 +1.0 837,852 - HGI48_RS03945 0.55 +1.9 838,132 + HGI48_RS03945 0.85 +1.7 838,132 + HGI48_RS03945 0.85 +1.0 838,132 + HGI48_RS03945 0.85 +1.4 838,133 - HGI48_RS03945 0.85 -1.0 838,133 - HGI48_RS03945 0.85 -0.0 838,133 - +1.1 838,133 - HGI48_RS03945 0.85 +0.2 838,264 + +0.4 838,264 + -1.4 838,264 + -1.6 838,264 + +1.0 838,264 + +0.0 838,264 + +0.2 838,264 + -1.3 838,265 - +2.0 838,265 - +1.3 838,265 - -1.3 838,265 - -1.0 838,273 + +0.5 838,274 - +0.3 838,299 + -0.5 838,380 + HGI48_RS03950 0.15 +1.3 838,380 + HGI48_RS03950 0.15 -0.0 838,380 + HGI48_RS03950 0.15 -0.4 838,380 + HGI48_RS03950 0.15 -0.1 838,381 - HGI48_RS03950 0.15 -0.4 838,381 - -1.3 838,381 - HGI48_RS03950 0.15 -2.4 838,381 - HGI48_RS03950 0.15 +0.5 838,381 - HGI48_RS03950 0.15 +0.5 838,381 - HGI48_RS03950 0.15 -0.8 838,381 - HGI48_RS03950 0.15 +1.2 838,381 - -0.0 838,430 + HGI48_RS03950 0.25 +1.0 838,430 + HGI48_RS03950 0.25 -0.5 838,430 + HGI48_RS03950 0.25 -0.2 838,431 - HGI48_RS03950 0.25 -0.6 838,431 - HGI48_RS03950 0.25 +0.3 838,431 - HGI48_RS03950 0.25 +0.2 838,431 - HGI48_RS03950 0.25 -0.2 838,431 - HGI48_RS03950 0.25 +0.7 838,431 - HGI48_RS03950 0.25 -1.6 838,431 - HGI48_RS03950 0.25 -1.3 838,431 - HGI48_RS03950 0.25 -1.5 838,437 + HGI48_RS03950 0.26 +0.8 838,437 + HGI48_RS03950 0.26 +0.5 838,437 + HGI48_RS03950 0.26 -1.0 838,438 - HGI48_RS03950 0.26 +0.6 838,569 + HGI48_RS03950 0.50 +0.6 838,570 - HGI48_RS03950 0.51 +0.5 838,742 - HGI48_RS03950 0.83 +0.2 838,846 + +1.5 838,847 - +0.3 838,847 - -0.5 838,875 - -1.6 838,875 - -1.8 838,875 - +0.2 838,985 - HGI48_RS03955 0.11 -0.6 839,095 - HGI48_RS03955 0.23 -2.2 839,228 + HGI48_RS03955 0.38 -1.0 839,228 + HGI48_RS03955 0.38 -0.3 839,228 + HGI48_RS03955 0.38 -0.6 839,228 + HGI48_RS03955 0.38 -0.6 839,229 - HGI48_RS03955 0.38 -1.9 839,229 - HGI48_RS03955 0.38 -1.3 839,452 - HGI48_RS03955 0.64 -1.5 839,466 + HGI48_RS03955 0.65 +0.9 839,510 + HGI48_RS03955 0.70 -3.1 839,510 + HGI48_RS03955 0.70 +0.5 839,511 - HGI48_RS03955 0.70 -1.6 839,511 - HGI48_RS03955 0.70 +0.5 839,681 + HGI48_RS03955 0.90 -2.0 839,682 - HGI48_RS03955 0.90 -0.8 839,682 - HGI48_RS03955 0.90 +0.1 839,697 + -1.5 839,698 - -0.5 839,698 - -0.0 839,698 - +0.4 839,698 - -1.0 839,698 - -1.0 839,698 - -0.0 839,698 - -0.8 839,700 + -2.5 839,700 + -0.0 839,700 + +0.6 839,700 + +0.5 839,700 + +0.7 839,700 + +1.5 839,700 + -1.5 839,700 + -0.6 839,700 + -0.8 839,700 + -0.3 839,701 - +1.1 839,755 + -1.5 839,755 + +0.2 839,798 + -1.3 839,798 + -1.0 839,816 + +0.6 839,816 + +1.0 839,817 - -2.5 839,817 - +0.3 839,817 - -2.0
Or see this region's nucleotide sequence