Experiment: M9+polygalacturonate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02600 and HGI48_RS02605 are separated by 1 nucleotides HGI48_RS02605 and HGI48_RS02610 are separated by 2 nucleotides
HGI48_RS02600: HGI48_RS02600 - outer membrane beta-barrel protein, at 563,193 to 564,479
_RS02600
HGI48_RS02605: HGI48_RS02605 - polysaccharide biosynthesis/export family protein, at 564,481 to 565,038
_RS02605
HGI48_RS02610: HGI48_RS02610 - polysaccharide biosynthesis tyrosine autokinase, at 565,041 to 567,173
_RS02610
Position (kb) 564
565
566 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 563.483 kb on + strand, within HGI48_RS02600 at 563.487 kb on + strand, within HGI48_RS02600 at 563.488 kb on - strand, within HGI48_RS02600 at 563.488 kb on - strand, within HGI48_RS02600 at 563.510 kb on + strand, within HGI48_RS02600 at 563.654 kb on + strand, within HGI48_RS02600 at 563.666 kb on + strand, within HGI48_RS02600 at 563.677 kb on + strand, within HGI48_RS02600 at 563.677 kb on + strand, within HGI48_RS02600 at 563.688 kb on + strand, within HGI48_RS02600 at 563.689 kb on - strand, within HGI48_RS02600 at 563.689 kb on - strand, within HGI48_RS02600 at 563.689 kb on - strand, within HGI48_RS02600 at 563.747 kb on + strand, within HGI48_RS02600 at 563.750 kb on - strand, within HGI48_RS02600 at 563.768 kb on + strand at 563.768 kb on + strand at 563.790 kb on + strand, within HGI48_RS02600 at 563.796 kb on + strand, within HGI48_RS02600 at 563.797 kb on - strand, within HGI48_RS02600 at 563.799 kb on - strand, within HGI48_RS02600 at 563.799 kb on - strand at 563.842 kb on + strand, within HGI48_RS02600 at 563.885 kb on + strand, within HGI48_RS02600 at 563.905 kb on - strand, within HGI48_RS02600 at 563.937 kb on + strand, within HGI48_RS02600 at 563.937 kb on + strand, within HGI48_RS02600 at 563.937 kb on + strand, within HGI48_RS02600 at 563.938 kb on - strand, within HGI48_RS02600 at 563.940 kb on + strand at 563.941 kb on - strand at 563.949 kb on + strand, within HGI48_RS02600 at 564.007 kb on + strand, within HGI48_RS02600 at 564.009 kb on + strand, within HGI48_RS02600 at 564.009 kb on + strand at 564.010 kb on - strand, within HGI48_RS02600 at 564.010 kb on - strand, within HGI48_RS02600 at 564.010 kb on - strand, within HGI48_RS02600 at 564.010 kb on - strand at 564.109 kb on + strand, within HGI48_RS02600 at 564.109 kb on + strand, within HGI48_RS02600 at 564.110 kb on - strand, within HGI48_RS02600 at 564.110 kb on - strand, within HGI48_RS02600 at 564.110 kb on - strand, within HGI48_RS02600 at 564.113 kb on + strand, within HGI48_RS02600 at 564.113 kb on + strand, within HGI48_RS02600 at 564.113 kb on + strand, within HGI48_RS02600 at 564.114 kb on - strand, within HGI48_RS02600 at 564.114 kb on - strand, within HGI48_RS02600 at 564.114 kb on - strand, within HGI48_RS02600 at 564.114 kb on - strand, within HGI48_RS02600 at 564.114 kb on - strand, within HGI48_RS02600 at 564.168 kb on - strand, within HGI48_RS02600 at 564.172 kb on - strand, within HGI48_RS02600 at 564.229 kb on - strand, within HGI48_RS02600 at 564.235 kb on - strand, within HGI48_RS02600 at 564.249 kb on + strand, within HGI48_RS02600 at 564.249 kb on + strand, within HGI48_RS02600 at 564.285 kb on - strand, within HGI48_RS02600 at 564.309 kb on + strand, within HGI48_RS02600 at 564.309 kb on + strand, within HGI48_RS02600 at 564.310 kb on - strand, within HGI48_RS02600 at 564.341 kb on - strand, within HGI48_RS02600 at 564.346 kb on - strand, within HGI48_RS02600 at 564.362 kb on - strand at 564.440 kb on + strand at 564.452 kb on + strand at 564.453 kb on - strand at 564.453 kb on - strand at 564.458 kb on + strand at 564.465 kb on - strand at 564.465 kb on - strand at 564.470 kb on - strand at 564.477 kb on + strand at 564.477 kb on + strand at 564.478 kb on - strand at 564.564 kb on + strand, within HGI48_RS02605 at 564.596 kb on + strand, within HGI48_RS02605 at 564.618 kb on + strand, within HGI48_RS02605 at 564.618 kb on + strand, within HGI48_RS02605 at 564.618 kb on + strand at 564.619 kb on - strand, within HGI48_RS02605 at 564.681 kb on + strand, within HGI48_RS02605 at 564.682 kb on - strand at 564.682 kb on - strand, within HGI48_RS02605 at 564.682 kb on - strand, within HGI48_RS02605 at 564.691 kb on + strand, within HGI48_RS02605 at 564.691 kb on + strand, within HGI48_RS02605 at 564.691 kb on + strand, within HGI48_RS02605 at 564.691 kb on + strand, within HGI48_RS02605 at 564.691 kb on + strand, within HGI48_RS02605 at 564.691 kb on + strand, within HGI48_RS02605 at 564.692 kb on - strand at 564.692 kb on - strand at 564.692 kb on - strand, within HGI48_RS02605 at 564.692 kb on - strand, within HGI48_RS02605 at 564.692 kb on - strand at 564.692 kb on - strand at 564.693 kb on + strand, within HGI48_RS02605 at 564.694 kb on - strand, within HGI48_RS02605 at 564.694 kb on - strand, within HGI48_RS02605 at 564.769 kb on + strand, within HGI48_RS02605 at 564.820 kb on + strand at 564.821 kb on - strand, within HGI48_RS02605 at 564.821 kb on - strand, within HGI48_RS02605 at 564.821 kb on - strand, within HGI48_RS02605 at 564.853 kb on + strand, within HGI48_RS02605 at 564.854 kb on - strand at 564.854 kb on - strand, within HGI48_RS02605 at 564.859 kb on + strand at 564.983 kb on + strand at 564.983 kb on + strand at 564.983 kb on + strand at 565.048 kb on + strand at 565.049 kb on - strand at 565.049 kb on - strand at 565.049 kb on - strand at 565.052 kb on + strand at 565.052 kb on + strand at 565.135 kb on + strand at 565.136 kb on - strand at 565.136 kb on - strand at 565.136 kb on - strand at 565.200 kb on + strand at 565.200 kb on + strand at 565.200 kb on + strand at 565.200 kb on + strand at 565.200 kb on + strand at 565.200 kb on + strand at 565.200 kb on + strand at 565.200 kb on + strand at 565.201 kb on - strand at 565.201 kb on - strand at 565.201 kb on - strand at 565.201 kb on - strand at 565.201 kb on - strand at 565.201 kb on - strand at 565.204 kb on + strand at 565.204 kb on + strand at 565.204 kb on + strand at 565.205 kb on - strand at 565.226 kb on + strand at 565.273 kb on - strand, within HGI48_RS02610 at 565.273 kb on - strand at 565.297 kb on - strand, within HGI48_RS02610 at 565.297 kb on - strand, within HGI48_RS02610 at 565.308 kb on + strand, within HGI48_RS02610 at 565.505 kb on + strand at 565.505 kb on + strand, within HGI48_RS02610 at 565.506 kb on - strand, within HGI48_RS02610 at 565.506 kb on - strand, within HGI48_RS02610 at 565.513 kb on - strand, within HGI48_RS02610 at 565.571 kb on + strand, within HGI48_RS02610 at 565.574 kb on + strand, within HGI48_RS02610 at 565.574 kb on + strand, within HGI48_RS02610 at 565.575 kb on - strand, within HGI48_RS02610 at 565.578 kb on + strand, within HGI48_RS02610 at 565.578 kb on + strand, within HGI48_RS02610 at 565.579 kb on - strand, within HGI48_RS02610 at 565.579 kb on - strand, within HGI48_RS02610 at 565.579 kb on - strand, within HGI48_RS02610 at 565.580 kb on + strand, within HGI48_RS02610 at 565.581 kb on - strand, within HGI48_RS02610 at 565.812 kb on + strand, within HGI48_RS02610 at 565.812 kb on + strand, within HGI48_RS02610 at 565.813 kb on - strand, within HGI48_RS02610 at 565.813 kb on - strand, within HGI48_RS02610 at 565.813 kb on - strand, within HGI48_RS02610 at 565.877 kb on + strand, within HGI48_RS02610 at 565.877 kb on + strand, within HGI48_RS02610 at 565.878 kb on - strand, within HGI48_RS02610 at 565.900 kb on + strand, within HGI48_RS02610 at 565.900 kb on + strand, within HGI48_RS02610 at 565.900 kb on + strand, within HGI48_RS02610 at 565.901 kb on - strand, within HGI48_RS02610 at 565.901 kb on - strand, within HGI48_RS02610 at 565.933 kb on + strand, within HGI48_RS02610 at 565.933 kb on + strand, within HGI48_RS02610 at 565.934 kb on - strand at 565.934 kb on - strand, within HGI48_RS02610 at 565.935 kb on + strand, within HGI48_RS02610 at 565.936 kb on - strand, within HGI48_RS02610 at 565.942 kb on + strand, within HGI48_RS02610 at 565.943 kb on - strand, within HGI48_RS02610 at 565.943 kb on - strand, within HGI48_RS02610 at 565.943 kb on - strand, within HGI48_RS02610 at 565.947 kb on - strand, within HGI48_RS02610 at 565.947 kb on - strand, within HGI48_RS02610 at 565.947 kb on - strand, within HGI48_RS02610 at 565.968 kb on - strand, within HGI48_RS02610 at 565.975 kb on + strand, within HGI48_RS02610 at 565.976 kb on - strand, within HGI48_RS02610
Per-strain Table
Position Strand Gene LocusTag Fraction M9+polygalacturonate remove 563,483 + HGI48_RS02600 0.23 -0.3 563,487 + HGI48_RS02600 0.23 -1.0 563,488 - HGI48_RS02600 0.23 -2.2 563,488 - HGI48_RS02600 0.23 +2.1 563,510 + HGI48_RS02600 0.25 -0.3 563,654 + HGI48_RS02600 0.36 +1.3 563,666 + HGI48_RS02600 0.37 -0.1 563,677 + HGI48_RS02600 0.38 -1.9 563,677 + HGI48_RS02600 0.38 +1.4 563,688 + HGI48_RS02600 0.38 -0.3 563,689 - HGI48_RS02600 0.39 +0.7 563,689 - HGI48_RS02600 0.39 -0.8 563,689 - HGI48_RS02600 0.39 -0.3 563,747 + HGI48_RS02600 0.43 +0.6 563,750 - HGI48_RS02600 0.43 -0.4 563,768 + -1.4 563,768 + +2.0 563,790 + HGI48_RS02600 0.46 +0.6 563,796 + HGI48_RS02600 0.47 +0.8 563,797 - HGI48_RS02600 0.47 +0.4 563,799 - HGI48_RS02600 0.47 -1.9 563,799 - +0.7 563,842 + HGI48_RS02600 0.50 -0.6 563,885 + HGI48_RS02600 0.54 -1.4 563,905 - HGI48_RS02600 0.55 -1.3 563,937 + HGI48_RS02600 0.58 +0.1 563,937 + HGI48_RS02600 0.58 -1.1 563,937 + HGI48_RS02600 0.58 -0.6 563,938 - HGI48_RS02600 0.58 +0.0 563,940 + -0.9 563,941 - +1.2 563,949 + HGI48_RS02600 0.59 +1.8 564,007 + HGI48_RS02600 0.63 +0.6 564,009 + HGI48_RS02600 0.63 +0.5 564,009 + -1.7 564,010 - HGI48_RS02600 0.63 -0.4 564,010 - HGI48_RS02600 0.63 +0.6 564,010 - HGI48_RS02600 0.63 -0.3 564,010 - -0.6 564,109 + HGI48_RS02600 0.71 +0.6 564,109 + HGI48_RS02600 0.71 -0.3 564,110 - HGI48_RS02600 0.71 -1.4 564,110 - HGI48_RS02600 0.71 -2.7 564,110 - HGI48_RS02600 0.71 +1.7 564,113 + HGI48_RS02600 0.71 -0.9 564,113 + HGI48_RS02600 0.71 -0.1 564,113 + HGI48_RS02600 0.71 -1.7 564,114 - HGI48_RS02600 0.72 -0.2 564,114 - HGI48_RS02600 0.72 +0.1 564,114 - HGI48_RS02600 0.72 -1.0 564,114 - HGI48_RS02600 0.72 +0.7 564,114 - HGI48_RS02600 0.72 -0.8 564,168 - HGI48_RS02600 0.76 -2.0 564,172 - HGI48_RS02600 0.76 -1.3 564,229 - HGI48_RS02600 0.80 +0.6 564,235 - HGI48_RS02600 0.81 -1.6 564,249 + HGI48_RS02600 0.82 -0.6 564,249 + HGI48_RS02600 0.82 -0.1 564,285 - HGI48_RS02600 0.85 -0.9 564,309 + HGI48_RS02600 0.87 -0.9 564,309 + HGI48_RS02600 0.87 -1.5 564,310 - HGI48_RS02600 0.87 -1.3 564,341 - HGI48_RS02600 0.89 -1.3 564,346 - HGI48_RS02600 0.90 -2.1 564,362 - +1.5 564,440 + -1.4 564,452 + +1.3 564,453 - -0.3 564,453 - +1.6 564,458 + -0.6 564,465 - +1.4 564,465 - -0.9 564,470 - -0.3 564,477 + -0.9 564,477 + +0.0 564,478 - +0.2 564,564 + HGI48_RS02605 0.15 -0.5 564,596 + HGI48_RS02605 0.21 -1.4 564,618 + HGI48_RS02605 0.25 -1.1 564,618 + HGI48_RS02605 0.25 +0.3 564,618 + -2.0 564,619 - HGI48_RS02605 0.25 -2.1 564,681 + HGI48_RS02605 0.36 -0.3 564,682 - -0.0 564,682 - HGI48_RS02605 0.36 +0.8 564,682 - HGI48_RS02605 0.36 -0.1 564,691 + HGI48_RS02605 0.38 -1.4 564,691 + HGI48_RS02605 0.38 +0.2 564,691 + HGI48_RS02605 0.38 +1.0 564,691 + HGI48_RS02605 0.38 -1.1 564,691 + HGI48_RS02605 0.38 +1.1 564,691 + HGI48_RS02605 0.38 -0.3 564,692 - -1.4 564,692 - -1.3 564,692 - HGI48_RS02605 0.38 -1.3 564,692 - HGI48_RS02605 0.38 -1.8 564,692 - -1.1 564,692 - -1.9 564,693 + HGI48_RS02605 0.38 -1.8 564,694 - HGI48_RS02605 0.38 +0.7 564,694 - HGI48_RS02605 0.38 -0.3 564,769 + HGI48_RS02605 0.52 -2.0 564,820 + -0.6 564,821 - HGI48_RS02605 0.61 +0.4 564,821 - HGI48_RS02605 0.61 +3.0 564,821 - HGI48_RS02605 0.61 -0.3 564,853 + HGI48_RS02605 0.67 -1.3 564,854 - -1.3 564,854 - HGI48_RS02605 0.67 -1.3 564,859 + -0.2 564,983 + +0.1 564,983 + -0.3 564,983 + -3.0 565,048 + +0.1 565,049 - +2.7 565,049 - +1.0 565,049 - -0.8 565,052 + -1.6 565,052 + +0.1 565,135 + +0.1 565,136 - +2.6 565,136 - +0.3 565,136 - +0.6 565,200 + +3.9 565,200 + -1.8 565,200 + -0.6 565,200 + +0.5 565,200 + +1.5 565,200 + -0.6 565,200 + +0.9 565,200 + -0.4 565,201 - -2.1 565,201 - +2.2 565,201 - -0.9 565,201 - +0.1 565,201 - -0.2 565,201 - +0.5 565,204 + -2.4 565,204 + -1.6 565,204 + +0.6 565,205 - +1.1 565,226 + -2.0 565,273 - HGI48_RS02610 0.11 -0.4 565,273 - -0.1 565,297 - HGI48_RS02610 0.12 +0.6 565,297 - HGI48_RS02610 0.12 +0.7 565,308 + HGI48_RS02610 0.13 +1.3 565,505 + -0.9 565,505 + HGI48_RS02610 0.22 +1.0 565,506 - HGI48_RS02610 0.22 -0.5 565,506 - HGI48_RS02610 0.22 -1.2 565,513 - HGI48_RS02610 0.22 +2.2 565,571 + HGI48_RS02610 0.25 +1.2 565,574 + HGI48_RS02610 0.25 -1.5 565,574 + HGI48_RS02610 0.25 +1.2 565,575 - HGI48_RS02610 0.25 -0.3 565,578 + HGI48_RS02610 0.25 +0.7 565,578 + HGI48_RS02610 0.25 -0.7 565,579 - HGI48_RS02610 0.25 -0.5 565,579 - HGI48_RS02610 0.25 -1.4 565,579 - HGI48_RS02610 0.25 -0.1 565,580 + HGI48_RS02610 0.25 -0.7 565,581 - HGI48_RS02610 0.25 -1.4 565,812 + HGI48_RS02610 0.36 +0.5 565,812 + HGI48_RS02610 0.36 -1.7 565,813 - HGI48_RS02610 0.36 -0.9 565,813 - HGI48_RS02610 0.36 +1.5 565,813 - HGI48_RS02610 0.36 +2.9 565,877 + HGI48_RS02610 0.39 -0.0 565,877 + HGI48_RS02610 0.39 +0.5 565,878 - HGI48_RS02610 0.39 -0.9 565,900 + HGI48_RS02610 0.40 +1.1 565,900 + HGI48_RS02610 0.40 -0.6 565,900 + HGI48_RS02610 0.40 -1.3 565,901 - HGI48_RS02610 0.40 +0.2 565,901 - HGI48_RS02610 0.40 +2.3 565,933 + HGI48_RS02610 0.42 +0.1 565,933 + HGI48_RS02610 0.42 -0.2 565,934 - -0.6 565,934 - HGI48_RS02610 0.42 -2.8 565,935 + HGI48_RS02610 0.42 +0.8 565,936 - HGI48_RS02610 0.42 +0.7 565,942 + HGI48_RS02610 0.42 +1.1 565,943 - HGI48_RS02610 0.42 +1.0 565,943 - HGI48_RS02610 0.42 -0.2 565,943 - HGI48_RS02610 0.42 +1.5 565,947 - HGI48_RS02610 0.42 -1.5 565,947 - HGI48_RS02610 0.42 +0.4 565,947 - HGI48_RS02610 0.42 -0.2 565,968 - HGI48_RS02610 0.43 -1.3 565,975 + HGI48_RS02610 0.44 -0.5 565,976 - HGI48_RS02610 0.44 +1.4
Or see this region's nucleotide sequence