Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18625

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
4,179,621	-		HGI48_RS18620	0.27	+0.6
4,179,723	+		HGI48_RS18620	0.36	+0.6
4,179,755	-				+3.5
4,179,755	-		HGI48_RS18620	0.38	+1.0
4,179,810	-				+0.9
4,179,864	-				-0.1
4,179,872	+				-0.7
4,179,933	+		HGI48_RS18620	0.54	+0.1
4,179,934	-		HGI48_RS18620	0.54	-1.9
4,179,934	-		HGI48_RS18620	0.54	-0.9
4,179,955	+		HGI48_RS18620	0.56	+0.3
4,179,958	+		HGI48_RS18620	0.56	-1.0
4,179,959	-		HGI48_RS18620	0.57	-0.4
4,180,040	-		HGI48_RS18620	0.64	+0.4
4,180,066	-		HGI48_RS18620	0.66	+1.4
4,180,105	+		HGI48_RS18620	0.70	+2.3
4,180,105	+		HGI48_RS18620	0.70	+1.9
4,180,106	-		HGI48_RS18620	0.70	+1.2
4,180,106	-		HGI48_RS18620	0.70	+0.5
4,180,308	+		HGI48_RS18620	0.88	-1.2
4,180,308	+		HGI48_RS18620	0.88	+1.6
4,180,308	+		HGI48_RS18620	0.88	+1.0
4,180,308	+		HGI48_RS18620	0.88	-1.9
4,180,308	+		HGI48_RS18620	0.88	+0.8
4,180,309	-		HGI48_RS18620	0.88	+1.9
4,180,309	-		HGI48_RS18620	0.88	+1.2
4,180,375	+				+0.9
4,180,376	-				+0.0
4,180,404	+				+2.1
4,180,404	+				+1.7
4,180,404	+				-0.7
4,180,404	+				+1.0
4,180,405	-				+0.9
4,180,405	-				+0.8
4,180,405	-				+1.6
4,180,417	-				+0.6
4,180,444	+				+0.5
4,180,444	+				-0.4
4,180,444	+				-2.0
4,180,444	+				+0.4
4,180,444	+				+0.9
4,180,444	+				-0.4
4,180,444	+				+0.0
4,180,445	-				-0.6
4,180,445	-				+0.0
4,180,445	-				-1.0
4,180,445	-				-1.3
4,180,445	-				+1.0
4,180,445	-				-1.0
4,180,445	-				+2.0
4,180,445	-				+0.3
4,180,445	-				-0.3
4,180,445	-				+1.3
4,180,445	-				-1.9
4,180,446	+				-0.6
4,180,446	+				-0.3
4,180,447	-				+0.2
4,180,447	-				+0.6
4,180,447	-				+1.2
4,180,499	+				-0.9
4,180,620	+		HGI48_RS18625	0.13	+0.4
4,180,621	-		HGI48_RS18625	0.14	-2.1
4,180,621	-		HGI48_RS18625	0.14	+0.1
4,180,767	+		HGI48_RS18625	0.29	-2.2
4,180,768	-		HGI48_RS18625	0.29	+0.0
4,180,811	+		HGI48_RS18625	0.34	-0.7
4,180,811	+				-2.1
4,180,811	+				+0.5
4,180,811	+		HGI48_RS18625	0.34	-1.7
4,180,811	+				-1.2
4,180,811	+		HGI48_RS18625	0.34	-2.2
4,180,811	+		HGI48_RS18625	0.34	-0.7
4,180,811	+		HGI48_RS18625	0.34	-1.0
4,180,812	-		HGI48_RS18625	0.34	+0.9
4,180,812	-		HGI48_RS18625	0.34	-0.6
4,180,812	-				-1.0
4,180,812	-		HGI48_RS18625	0.34	+1.2
4,180,812	-		HGI48_RS18625	0.34	+0.8
4,180,812	-		HGI48_RS18625	0.34	+2.3
4,180,812	-		HGI48_RS18625	0.34	+1.0
4,180,812	-		HGI48_RS18625	0.34	-1.6
4,180,856	+		HGI48_RS18625	0.39	+0.6
4,180,856	+		HGI48_RS18625	0.39	-1.2
4,180,856	+		HGI48_RS18625	0.39	-0.6
4,180,857	-				-1.9
4,180,857	-		HGI48_RS18625	0.39	+2.3
4,180,857	-		HGI48_RS18625	0.39	-1.6
4,180,857	-		HGI48_RS18625	0.39	-0.6
4,180,857	-		HGI48_RS18625	0.39	-1.0
4,180,857	-		HGI48_RS18625	0.39	+1.8
4,180,935	-		HGI48_RS18625	0.47	+1.4
4,180,935	-		HGI48_RS18625	0.47	-1.6
4,180,946	+		HGI48_RS18625	0.49	-1.1
4,180,947	-		HGI48_RS18625	0.49	-2.7
4,181,129	+				-1.7
4,181,129	+		HGI48_RS18625	0.68	+1.1
4,181,129	+		HGI48_RS18625	0.68	-1.2
4,181,130	-				-1.0
4,181,130	-		HGI48_RS18625	0.69	-1.6
4,181,130	-		HGI48_RS18625	0.69	-1.7
4,181,139	+				-0.4
4,181,139	+		HGI48_RS18625	0.69	-1.4
4,181,139	+		HGI48_RS18625	0.69	+0.0
4,181,140	-		HGI48_RS18625	0.70	+0.1
4,181,140	-				-1.4
4,181,140	-		HGI48_RS18625	0.70	+0.1
4,181,140	-		HGI48_RS18625	0.70	-1.9
4,181,211	+		HGI48_RS18625	0.77	+0.2
4,181,211	+		HGI48_RS18625	0.77	-1.4
4,181,211	+		HGI48_RS18625	0.77	-0.7
4,181,211	+		HGI48_RS18625	0.77	+0.0
4,181,212	-		HGI48_RS18625	0.77	+0.7
4,181,212	-		HGI48_RS18625	0.77	+1.2
4,181,212	-		HGI48_RS18625	0.77	-1.4
4,181,298	+		HGI48_RS18625	0.87	-1.2
4,181,298	+		HGI48_RS18625	0.87	-0.3
4,181,299	-				-1.2
4,181,453	+				-0.4
4,181,456	+				+0.0
4,181,456	+				+0.3
4,181,456	+				+0.1
4,181,456	+				-0.2
4,181,456	+				-0.6
4,181,456	+				+0.1
4,181,456	+				-0.1
4,181,456	+				+0.2
4,181,456	+				+0.3
4,181,456	+				-1.4
4,181,456	+				+0.0
4,181,456	+				-0.1
4,181,457	-				-0.2
4,181,457	-				-0.4
4,181,457	-				-2.4
4,181,457	-				+0.3
4,181,457	-				-0.9
4,181,457	-				+1.2
4,181,458	+				-0.6
4,181,458	+				+0.8
4,181,458	+				-1.6
4,181,481	+				+0.8
4,181,482	-				-1.1
4,181,482	-				-0.3
4,181,493	-				-0.1
4,181,493	-				+0.7
4,181,493	-				-0.9
4,181,514	-				+1.3
4,181,617	+		HGI48_RS18630	0.88	-0.9
4,181,735	+				+0.2
4,181,782	+				-0.6
4,181,782	+				+0.4
4,181,784	+				-0.4
4,181,784	+				-2.9
4,181,784	+				+1.1
4,181,785	-				-1.0
4,181,785	-				-0.9
4,181,785	-				+1.4
4,181,806	+				+0.2
4,181,841	+				-0.4
4,181,841	+				-2.3
4,181,841	+				+0.1
4,181,842	-				+0.6
4,181,842	-				+0.3
4,181,842	-				+0.4
4,181,847	+				-0.4
4,181,901	+				+0.9
4,181,910	-				-1.0
4,181,913	-				+0.0
4,181,913	-				-0.3
4,182,004	+				-0.7
4,182,059	+		HGI48_RS18635	0.22	-0.3
4,182,059	+		HGI48_RS18635	0.22	+0.7
4,182,059	+		HGI48_RS18635	0.22	-0.4
4,182,059	+		HGI48_RS18635	0.22	-0.7
4,182,059	+		HGI48_RS18635	0.22	-1.4
4,182,060	-		HGI48_RS18635	0.22	-0.5
4,182,060	-		HGI48_RS18635	0.22	-1.5
4,182,060	-		HGI48_RS18635	0.22	-1.1
4,182,060	-		HGI48_RS18635	0.22	-0.2
4,182,152	+		HGI48_RS18635	0.34	-1.9
4,182,152	+		HGI48_RS18635	0.34	+1.6
4,182,152	+		HGI48_RS18635	0.34	+0.0
4,182,152	+		HGI48_RS18635	0.34	+0.4
4,182,152	+				-1.4
4,182,152	+				+0.0
4,182,153	-		HGI48_RS18635	0.34	-1.6
4,182,153	-		HGI48_RS18635	0.34	-1.1
4,182,153	-		HGI48_RS18635	0.34	+0.0
4,182,153	-		HGI48_RS18635	0.34	-0.2
4,182,153	-		HGI48_RS18635	0.34	+2.5
4,182,153	-		HGI48_RS18635	0.34	+0.4
4,182,258	-		HGI48_RS18635	0.49	-1.4
4,182,258	-		HGI48_RS18635	0.49	-0.6
4,182,258	-				+0.7
4,182,337	+		HGI48_RS18635	0.59	-3.0
4,182,337	+		HGI48_RS18635	0.59	+2.3
4,182,338	-		HGI48_RS18635	0.59	+0.3
4,182,421	+		HGI48_RS18635	0.71	-1.9