Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15745

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
3,537,431	+				-1.0
3,537,431	+				-1.6
3,537,432	-				+1.6
3,537,797	+		HGI48_RS15740	0.35	+0.2
3,537,797	+		HGI48_RS15740	0.35	-0.9
3,537,797	+		HGI48_RS15740	0.35	+1.2
3,537,797	+				+0.4
3,537,797	+		HGI48_RS15740	0.35	-0.2
3,537,798	-		HGI48_RS15740	0.35	+0.1
3,537,798	-		HGI48_RS15740	0.35	-0.4
3,537,798	-		HGI48_RS15740	0.35	-0.7
3,537,880	+		HGI48_RS15740	0.46	+0.6
3,538,035	+		HGI48_RS15740	0.65	-0.4
3,538,063	+		HGI48_RS15740	0.69	+0.2
3,538,063	+		HGI48_RS15740	0.69	-0.1
3,538,093	+		HGI48_RS15740	0.73	+0.2
3,538,093	+		HGI48_RS15740	0.73	-0.6
3,538,093	+		HGI48_RS15740	0.73	-1.4
3,538,093	+		HGI48_RS15740	0.73	+0.3
3,538,093	+		HGI48_RS15740	0.73	+0.6
3,538,093	+		HGI48_RS15740	0.73	-0.4
3,538,093	+		HGI48_RS15740	0.73	+0.1
3,538,093	+		HGI48_RS15740	0.73	+0.6
3,538,093	+		HGI48_RS15740	0.73	+0.4
3,538,093	+				-1.6
3,538,094	-		HGI48_RS15740	0.73	-1.8
3,538,094	-		HGI48_RS15740	0.73	-0.4
3,538,094	-		HGI48_RS15740	0.73	-0.1
3,538,094	-		HGI48_RS15740	0.73	-0.2
3,538,094	-		HGI48_RS15740	0.73	+0.5
3,538,094	-		HGI48_RS15740	0.73	+0.4
3,538,094	-		HGI48_RS15740	0.73	-0.2
3,538,133	+		HGI48_RS15740	0.78	-0.7
3,538,133	+		HGI48_RS15740	0.78	-0.5
3,538,134	-				-0.2
3,538,134	-		HGI48_RS15740	0.78	-1.4
3,538,162	+		HGI48_RS15740	0.82	-0.5
3,538,162	+		HGI48_RS15740	0.82	-0.4
3,538,193	+				-2.2
3,538,199	+		HGI48_RS15740	0.86	-1.6
3,538,289	+				+1.4
3,538,311	-				-0.2
3,538,311	-				-1.4
3,538,311	-				-1.2
3,538,330	+				+0.7
3,538,330	+				+1.4
3,538,331	-				+0.1
3,538,331	-				-0.6
3,538,358	+				+1.0
3,538,392	+				-2.5
3,538,442	-				-2.9
3,538,616	+		HGI48_RS15745	0.21	+0.2
3,538,617	-		HGI48_RS15745	0.21	+0.8
3,538,617	-		HGI48_RS15745	0.21	-0.2
3,538,617	-		HGI48_RS15745	0.21	+1.6
3,538,617	-		HGI48_RS15745	0.21	+0.8
3,538,617	-		HGI48_RS15745	0.21	+0.8
3,538,624	-		HGI48_RS15745	0.22	+0.7
3,538,683	+		HGI48_RS15745	0.26	-0.3
3,538,684	-		HGI48_RS15745	0.26	+0.5
3,538,737	+		HGI48_RS15745	0.30	+0.8
3,538,737	+		HGI48_RS15745	0.30	+1.6
3,538,737	+		HGI48_RS15745	0.30	+0.5
3,538,738	-		HGI48_RS15745	0.30	-0.9
3,538,759	+		HGI48_RS15745	0.31	+1.4
3,538,759	+				-1.6
3,538,759	+		HGI48_RS15745	0.31	+1.8
3,538,759	+				-0.8
3,538,759	+		HGI48_RS15745	0.31	-1.9
3,538,759	+		HGI48_RS15745	0.31	-2.1
3,538,759	+		HGI48_RS15745	0.31	-1.3
3,538,760	-		HGI48_RS15745	0.31	+0.4
3,538,760	-		HGI48_RS15745	0.31	+0.6
3,538,760	-		HGI48_RS15745	0.31	-1.6
3,538,760	-		HGI48_RS15745	0.31	-0.9
3,538,802	+				-1.6
3,538,802	+		HGI48_RS15745	0.34	+0.3
3,538,802	+		HGI48_RS15745	0.34	+0.2
3,538,802	+				+0.9
3,538,802	+		HGI48_RS15745	0.34	-0.3
3,538,802	+		HGI48_RS15745	0.34	-1.6
3,538,803	-		HGI48_RS15745	0.34	-0.1
3,538,803	-		HGI48_RS15745	0.34	+2.6
3,538,803	-		HGI48_RS15745	0.34	+0.1
3,538,803	-		HGI48_RS15745	0.34	+0.2
3,538,803	-		HGI48_RS15745	0.34	+1.1
3,538,831	+				-0.3
3,538,831	+		HGI48_RS15745	0.36	-1.4
3,538,831	+		HGI48_RS15745	0.36	-0.3
3,538,831	+		HGI48_RS15745	0.36	-0.0
3,538,831	+		HGI48_RS15745	0.36	+1.4
3,538,831	+		HGI48_RS15745	0.36	-1.8
3,538,832	-		HGI48_RS15745	0.36	+1.3
3,538,845	+		HGI48_RS15745	0.37	-0.5
3,538,845	+		HGI48_RS15745	0.37	-1.4
3,538,845	+		HGI48_RS15745	0.37	-1.3
3,538,845	+		HGI48_RS15745	0.37	+0.4
3,538,846	-		HGI48_RS15745	0.37	+1.0
3,538,846	-		HGI48_RS15745	0.37	+0.5
3,538,848	+		HGI48_RS15745	0.38	-1.9
3,538,897	+		HGI48_RS15745	0.41	-0.3
3,538,897	+		HGI48_RS15745	0.41	+0.0
3,538,897	+		HGI48_RS15745	0.41	-1.4
3,538,897	+		HGI48_RS15745	0.41	-0.7
3,538,897	+		HGI48_RS15745	0.41	+0.8
3,538,897	+		HGI48_RS15745	0.41	-1.3
3,538,897	+		HGI48_RS15745	0.41	-1.8
3,538,898	-		HGI48_RS15745	0.41	+0.5
3,538,898	-		HGI48_RS15745	0.41	+2.4
3,539,349	+		HGI48_RS15745	0.73	-0.1
3,539,350	-		HGI48_RS15745	0.73	-0.9
3,539,384	+		HGI48_RS15745	0.75	-0.0
3,539,384	+		HGI48_RS15745	0.75	-0.3
3,539,384	+		HGI48_RS15745	0.75	+0.3
3,539,384	+		HGI48_RS15745	0.75	-1.1
3,539,385	-		HGI48_RS15745	0.75	-0.6
3,539,402	+		HGI48_RS15745	0.76	-1.6
3,539,403	-		HGI48_RS15745	0.76	+1.2
3,539,405	+		HGI48_RS15745	0.76	-0.6
3,539,405	+		HGI48_RS15745	0.76	-0.3
3,539,405	+		HGI48_RS15745	0.76	-0.3
3,539,405	+		HGI48_RS15745	0.76	+1.0
3,539,405	+		HGI48_RS15745	0.76	-1.9
3,539,405	+		HGI48_RS15745	0.76	-0.5
3,539,405	+		HGI48_RS15745	0.76	-0.8
3,539,405	+		HGI48_RS15745	0.76	+0.2
3,539,406	-		HGI48_RS15745	0.76	+0.5
3,539,406	-		HGI48_RS15745	0.76	+0.6
3,539,406	-		HGI48_RS15745	0.76	+0.3
3,539,454	-		HGI48_RS15745	0.80	+1.2
3,539,475	-		HGI48_RS15745	0.81	+0.3
3,539,475	-				-1.8
3,539,519	+		HGI48_RS15745	0.84	-1.1
3,539,519	+		HGI48_RS15745	0.84	-0.9
3,539,583	+		HGI48_RS15745	0.89	+1.1
3,539,583	+		HGI48_RS15745	0.89	+2.4
3,539,583	+		HGI48_RS15745	0.89	-1.1
3,539,583	+		HGI48_RS15745	0.89	+0.0
3,539,583	+		HGI48_RS15745	0.89	-0.9
3,539,584	-		HGI48_RS15745	0.89	+1.4
3,539,584	-		HGI48_RS15745	0.89	-0.2
3,539,590	-				-1.8
3,539,590	-		HGI48_RS15745	0.89	-0.2
3,539,633	+				-0.6
3,539,633	+				-0.3
3,539,665	+				+0.4
3,539,665	+				-1.1
3,539,666	-				-2.5
3,539,666	-				-0.7
3,539,685	+				+1.4
3,539,742	+				-0.0
3,539,772	+				+0.8
3,539,772	+				+0.7
3,539,773	-				-2.3
3,539,799	+				-0.3
3,539,800	-				+0.4
3,539,800	-				-0.6
3,539,925	-				-0.0
3,539,970	+				-1.8
3,539,970	+				-0.2
3,539,970	+				+0.6
3,539,970	+				-0.1
3,539,970	+				-1.9
3,539,970	+				+0.8
3,539,970	+				+2.6
3,539,971	-				-0.1
3,539,971	-				-0.2
3,539,971	-				+0.7
3,540,033	-				-1.2
3,540,049	+				-1.6
3,540,050	-				-0.1
3,540,050	-				+0.1
3,540,077	+				-0.9
3,540,078	-				-1.1
3,540,103	-				+0.4
3,540,103	-				-0.2
3,540,267	-				+0.2
3,540,267	-				-2.6
3,540,306	-				-0.4
3,540,383	+				-3.1
3,540,384	-				+0.4
3,540,386	+				-0.8
3,540,387	-				-1.6
3,540,388	+				-0.2
3,540,388	+				-0.9
3,540,389	-				+0.2
3,540,495	+				-0.8
3,540,495	+				-2.2
3,540,495	+				-1.9
3,540,495	+				-1.2
3,540,495	+				+1.4
3,540,496	-				-3.7
3,540,496	-				-0.9
3,540,496	-				-2.1
3,540,496	-				-0.9
3,540,496	-				-2.2
3,540,496	-				-2.6
3,540,674	+				-0.9
3,540,674	+				-3.5
3,540,687	-				-1.9
3,540,687	-				-0.4