Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14290

Experiment: M9+polygalacturonate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS14285 and HGI48_RS14290 are separated by 114 nucleotidesHGI48_RS14290 and HGI48_RS14295 overlap by 4 nucleotidesHGI48_RS14295 and HGI48_RS14300 are separated by 2 nucleotides HGI48_RS14285: HGI48_RS14285 - NADH-quinone oxidoreductase subunit NuoG, at 3,206,668 to 3,209,394 _RS14285 HGI48_RS14290: HGI48_RS14290 - NADH-quinone oxidoreductase subunit NuoF, at 3,209,509 to 3,210,858 _RS14290 HGI48_RS14295: HGI48_RS14295 - NADH-quinone oxidoreductase subunit NuoE, at 3,210,855 to 3,211,385 _RS14295 HGI48_RS14300: HGI48_RS14300 - NADH-quinone oxidoreductase subunit C/D, at 3,211,388 to 3,213,187 _RS14300 Position (kb) 3209 3210 3211Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3209.168 kb on + strandat 3209.788 kb on - strand, within HGI48_RS14290at 3210.863 kb on - strandat 3211.386 kb on - strandat 3211.433 kb on + strandat 3211.554 kb on + strandat 3211.554 kb on + strandat 3211.554 kb on + strandat 3211.670 kb on - strand, within HGI48_RS14300

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+polygalacturonate
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3,209,168 + -1.1
3,209,788 - HGI48_RS14290 0.21 -0.3
3,210,863 - -0.3
3,211,386 - -4.0
3,211,433 + -0.2
3,211,554 + -0.3
3,211,554 + -1.8
3,211,554 + -1.6
3,211,670 - HGI48_RS14300 0.16 -1.1

Or see this region's nucleotide sequence