Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS09655

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
2,080,917	+		HGI48_RS09650	0.17	-2.5
2,080,917	+		HGI48_RS09650	0.17	-1.0
2,080,918	-		HGI48_RS09650	0.18	+1.0
2,080,918	-		HGI48_RS09650	0.18	+1.3
2,080,918	-		HGI48_RS09650	0.18	+0.0
2,080,918	-		HGI48_RS09650	0.18	-2.7
2,080,936	-				+1.2
2,080,938	+		HGI48_RS09650	0.19	-0.5
2,080,938	+		HGI48_RS09650	0.19	+1.7
2,080,938	+				+1.0
2,080,938	+		HGI48_RS09650	0.19	+0.5
2,080,939	-		HGI48_RS09650	0.19	-0.8
2,080,939	-		HGI48_RS09650	0.19	+0.7
2,081,084	+		HGI48_RS09650	0.32	-0.5
2,081,118	+				-1.3
2,081,118	+		HGI48_RS09650	0.35	-1.3
2,081,130	+		HGI48_RS09650	0.36	+0.4
2,081,130	+		HGI48_RS09650	0.36	-1.3
2,081,131	-		HGI48_RS09650	0.36	-0.1
2,081,131	-		HGI48_RS09650	0.36	-0.1
2,081,133	+		HGI48_RS09650	0.36	+2.3
2,081,134	-		HGI48_RS09650	0.36	+1.0
2,081,134	-		HGI48_RS09650	0.36	+1.6
2,081,146	+		HGI48_RS09650	0.37	-1.7
2,081,147	-		HGI48_RS09650	0.38	+1.0
2,081,147	-		HGI48_RS09650	0.38	+0.7
2,081,149	+		HGI48_RS09650	0.38	-2.1
2,081,150	-		HGI48_RS09650	0.38	-0.5
2,081,297	+		HGI48_RS09650	0.51	+1.0
2,081,297	+		HGI48_RS09650	0.51	-1.1
2,081,297	+		HGI48_RS09650	0.51	+0.3
2,081,298	-		HGI48_RS09650	0.51	-2.4
2,081,342	-		HGI48_RS09650	0.54	-1.0
2,081,342	-		HGI48_RS09650	0.54	-1.0
2,081,370	+		HGI48_RS09650	0.57	-0.2
2,081,388	+				-0.2
2,081,388	+		HGI48_RS09650	0.58	+1.0
2,081,389	-				-1.8
2,081,457	-		HGI48_RS09650	0.64	-0.2
2,081,527	+		HGI48_RS09650	0.71	+0.1
2,081,528	-				+0.0
2,081,557	+		HGI48_RS09650	0.73	-1.0
2,081,623	+				+0.0
2,081,624	-		HGI48_RS09650	0.79	+0.5
2,081,624	-		HGI48_RS09650	0.79	-1.0
2,081,624	-		HGI48_RS09650	0.79	+0.0
2,081,626	-		HGI48_RS09650	0.79	-0.5
2,081,678	-		HGI48_RS09650	0.84	-1.0
2,081,706	+		HGI48_RS09650	0.86	-1.8
2,081,706	+		HGI48_RS09650	0.86	-0.7
2,081,707	-		HGI48_RS09650	0.86	+0.9
2,081,707	-				-0.4
2,081,707	-				-1.0
2,081,707	-		HGI48_RS09650	0.86	-1.0
2,081,708	+		HGI48_RS09650	0.86	-1.0
2,081,709	-		HGI48_RS09650	0.86	-0.5
2,081,709	-		HGI48_RS09650	0.86	-0.4
2,081,761	-				-1.3
2,081,773	+				+0.2
2,081,774	-				-0.2
2,081,818	+				-1.0
2,081,819	-				-0.3
2,081,819	-				+0.3
2,081,819	-				-1.0
2,081,940	+				+1.0
2,081,940	+				+0.7
2,081,999	+		HGI48_RS09655	0.12	-0.9
2,081,999	+		HGI48_RS09655	0.12	-0.2
2,082,000	-		HGI48_RS09655	0.12	-0.7
2,082,006	+		HGI48_RS09655	0.12	+0.2
2,082,007	-		HGI48_RS09655	0.13	-1.3
2,082,122	-		HGI48_RS09655	0.25	+0.0
2,082,122	-		HGI48_RS09655	0.25	+0.0
2,082,122	-				+0.0
2,082,123	+				-1.8
2,082,123	+				-0.5
2,082,123	+		HGI48_RS09655	0.25	-1.8
2,082,123	+		HGI48_RS09655	0.25	+1.4
2,082,123	+		HGI48_RS09655	0.25	+0.8
2,082,123	+				+0.8
2,082,123	+		HGI48_RS09655	0.25	-0.3
2,082,124	-				-2.0
2,082,124	-				+0.6
2,082,124	-		HGI48_RS09655	0.25	+1.4
2,082,124	-		HGI48_RS09655	0.25	-0.8
2,082,124	-		HGI48_RS09655	0.25	-0.5
2,082,124	-		HGI48_RS09655	0.25	-1.8
2,082,124	-		HGI48_RS09655	0.25	+0.5
2,082,124	-		HGI48_RS09655	0.25	-0.8
2,082,139	-		HGI48_RS09655	0.27	-0.4
2,082,202	-		HGI48_RS09655	0.34	+0.0
2,082,202	-				-0.5
2,082,465	+		HGI48_RS09655	0.62	-0.1
2,082,508	-		HGI48_RS09655	0.66	-2.0
2,082,611	+				-2.0
2,082,612	-		HGI48_RS09655	0.78	-1.0
2,082,631	-		HGI48_RS09655	0.80	+0.7
2,082,677	-				-1.5
2,082,701	+		HGI48_RS09655	0.87	+0.3
2,082,701	+		HGI48_RS09655	0.87	+1.0
2,082,709	+		HGI48_RS09655	0.88	-2.9
2,082,710	-		HGI48_RS09655	0.88	+0.0
2,082,710	-		HGI48_RS09655	0.88	-0.5
2,082,713	-		HGI48_RS09655	0.88	+1.6
2,082,781	+				-1.8
2,082,781	+				-1.1
2,082,782	-				+1.2
2,082,819	+				-0.2
2,082,820	-				-0.3
2,082,847	+				-1.0
2,082,855	+				-1.0
2,082,944	-				-1.0
2,082,953	+				-0.1
2,082,953	+				-0.1
2,082,954	-				-1.3
2,082,981	+				-1.3
2,083,002	+				-1.2
2,083,008	+				-1.0
2,083,008	+				-1.0
2,083,017	+				+0.1
2,083,019	+				-0.1
2,083,019	+				-2.0
2,083,019	+				-1.3
2,083,019	+				-0.1
2,083,019	+				-1.3
2,083,019	+				-1.0
2,083,020	-				+0.6
2,083,020	-				-2.0
2,083,020	-				-2.5
2,083,020	-				+0.5
2,083,020	-				-1.0
2,083,020	-				+0.3
2,083,020	-				-1.4
2,083,032	+				+2.7
2,083,033	-				+0.9
2,083,033	-				-0.3
2,083,089	+				-0.3
2,083,089	+				-1.8
2,083,089	+				-1.5
2,083,089	+				-0.5
2,083,090	-				-0.8
2,083,105	+				+0.0
2,083,105	+				-1.3
2,083,106	-				+1.3
2,083,106	-				-0.7
2,083,117	-				-1.3
2,083,122	-				-1.3
2,083,158	+				-0.2
2,083,159	-				-0.8
2,083,159	-				+1.4
2,083,159	-				-1.3
2,083,159	-				-2.4
2,083,185	-				-1.8
2,083,211	+				-0.1
2,083,212	-				-0.7
2,083,217	+				-1.0
2,083,217	+				-0.2
2,083,218	-				+1.2
2,083,218	-				-3.0
2,083,277	+				+0.5
2,083,277	+				+0.0
2,083,278	-				-1.0
2,083,281	+				+0.3
2,083,282	-				-0.5
2,083,288	+				+1.0
2,083,288	+				+0.1
2,083,288	+				-2.4
2,083,288	+				-1.8
2,083,288	+				-0.8
2,083,288	+				+1.0
2,083,288	+				-1.0
2,083,289	-				-0.7
2,083,289	-				+0.1
2,083,289	-				+0.9
2,083,292	+				-1.5
2,083,293	-				+1.6
2,083,293	-				-0.4
2,083,293	-				-2.9
2,083,293	-				-1.5
2,083,418	-				+0.0
2,083,420	+				+0.0
2,083,420	+				-0.1
2,083,420	+				-1.3
2,083,421	-				-0.6
2,083,421	-				-1.0
2,083,439	-				+1.4
2,083,451	+				-0.1
2,083,508	-				+0.6
2,083,508	-		HGI48_RS09660	0.12	+0.6
2,083,552	+				-2.0
2,083,578	-		HGI48_RS09660	0.22	-1.5
2,083,578	-		HGI48_RS09660	0.22	+0.9
2,083,578	-		HGI48_RS09660	0.22	+0.9
2,083,654	+		HGI48_RS09660	0.32	-1.5
2,083,654	+		HGI48_RS09660	0.32	+0.6
2,083,655	-				+0.8
2,083,690	+		HGI48_RS09660	0.37	-0.4
2,083,709	+		HGI48_RS09660	0.40	+1.0
2,083,775	+		HGI48_RS09660	0.48	-0.3