Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS09545

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
2,051,778	-				-0.1
2,051,952	+		HGI48_RS09540	0.19	-0.7
2,051,953	-		HGI48_RS09540	0.20	-0.3
2,051,953	-		HGI48_RS09540	0.20	-0.1
2,052,213	+		HGI48_RS09540	0.49	-0.5
2,052,213	+		HGI48_RS09540	0.49	-1.3
2,052,213	+		HGI48_RS09540	0.49	+0.0
2,052,213	+		HGI48_RS09540	0.49	+0.8
2,052,213	+				+1.5
2,052,213	+		HGI48_RS09540	0.49	-1.3
2,052,214	-		HGI48_RS09540	0.49	+1.0
2,052,214	-		HGI48_RS09540	0.49	-2.8
2,052,214	-		HGI48_RS09540	0.49	+1.7
2,052,214	-		HGI48_RS09540	0.49	-2.3
2,052,216	-		HGI48_RS09540	0.49	-1.0
2,052,275	+		HGI48_RS09540	0.56	+0.5
2,052,275	+				-0.5
2,052,276	-		HGI48_RS09540	0.56	-1.0
2,052,324	-		HGI48_RS09540	0.62	-0.7
2,052,374	+		HGI48_RS09540	0.67	-1.1
2,052,412	-		HGI48_RS09540	0.72	+0.1
2,052,432	+		HGI48_RS09540	0.74	-0.5
2,052,432	+		HGI48_RS09540	0.74	-2.5
2,052,433	-		HGI48_RS09540	0.74	-1.1
2,052,433	-		HGI48_RS09540	0.74	+1.5
2,052,478	-		HGI48_RS09540	0.79	-1.0
2,052,565	-		HGI48_RS09540	0.89	+0.6
2,052,621	+				+0.3
2,052,621	+				-1.9
2,052,789	+				-0.3
2,052,789	+				+1.3
2,052,790	-				-0.5
2,052,790	-				+1.7
2,052,791	+				+0.3
2,052,824	-				-0.2
2,053,011	+		HGI48_RS09545	0.21	-0.5
2,053,012	-		HGI48_RS09545	0.21	-0.1
2,053,012	-		HGI48_RS09545	0.21	-1.8
2,053,036	+		HGI48_RS09545	0.23	+1.2
2,053,037	-		HGI48_RS09545	0.23	-0.5
2,053,057	-		HGI48_RS09545	0.24	+0.4
2,053,065	+		HGI48_RS09545	0.25	-1.3
2,053,065	+		HGI48_RS09545	0.25	+0.2
2,053,065	+		HGI48_RS09545	0.25	+1.5
2,053,065	+		HGI48_RS09545	0.25	-1.0
2,053,065	+		HGI48_RS09545	0.25	-0.1
2,053,066	-		HGI48_RS09545	0.25	+0.4
2,053,066	-		HGI48_RS09545	0.25	-0.2
2,053,066	-		HGI48_RS09545	0.25	-0.4
2,053,100	-		HGI48_RS09545	0.27	-2.7
2,053,100	-		HGI48_RS09545	0.27	-0.7
2,053,106	-		HGI48_RS09545	0.27	+1.3
2,053,106	-		HGI48_RS09545	0.27	+0.1
2,053,204	+		HGI48_RS09545	0.34	+0.3
2,053,311	+		HGI48_RS09545	0.41	+0.2
2,053,311	+		HGI48_RS09545	0.41	-0.8
2,053,311	+				-1.8
2,053,421	+		HGI48_RS09545	0.49	+0.2
2,053,421	+		HGI48_RS09545	0.49	+0.3
2,053,522	+				+0.7
2,053,522	+		HGI48_RS09545	0.56	-2.5
2,053,522	+		HGI48_RS09545	0.56	+0.9
2,053,522	+		HGI48_RS09545	0.56	+0.0
2,053,522	+		HGI48_RS09545	0.56	+0.2
2,053,523	-		HGI48_RS09545	0.56	-1.1
2,053,531	+		HGI48_RS09545	0.56	+0.3
2,053,532	-		HGI48_RS09545	0.56	+1.0
2,053,597	+		HGI48_RS09545	0.61	+2.5
2,053,597	+		HGI48_RS09545	0.61	-0.3
2,053,597	+		HGI48_RS09545	0.61	+0.9
2,053,597	+		HGI48_RS09545	0.61	+0.8
2,053,598	-		HGI48_RS09545	0.61	-2.1
2,053,598	-				+1.0
2,053,598	-		HGI48_RS09545	0.61	-1.5
2,053,598	-		HGI48_RS09545	0.61	+1.0
2,053,754	+		HGI48_RS09545	0.72	+1.0
2,053,767	+		HGI48_RS09545	0.72	+0.7
2,053,767	+		HGI48_RS09545	0.72	-2.3
2,053,767	+		HGI48_RS09545	0.72	-0.2
2,053,767	+		HGI48_RS09545	0.72	-0.1
2,053,767	+				-0.5
2,053,840	+				-1.8
2,053,840	+				-0.1
2,053,840	+		HGI48_RS09545	0.77	-1.4
2,053,840	+		HGI48_RS09545	0.77	-0.1
2,053,840	+		HGI48_RS09545	0.77	-0.8
2,053,840	+		HGI48_RS09545	0.77	+1.2
2,053,840	+		HGI48_RS09545	0.77	+1.0
2,053,841	-				-0.3
2,053,845	+		HGI48_RS09545	0.78	-0.5
2,053,866	-		HGI48_RS09545	0.79	+1.0
2,053,901	-		HGI48_RS09545	0.82	-1.2
2,053,949	-		HGI48_RS09545	0.85	-0.5
2,053,949	-		HGI48_RS09545	0.85	+0.0
2,053,949	-		HGI48_RS09545	0.85	+1.4
2,053,951	+		HGI48_RS09545	0.85	+0.3
2,053,952	-		HGI48_RS09545	0.85	-0.1
2,053,952	-		HGI48_RS09545	0.85	+0.3
2,053,958	+		HGI48_RS09545	0.85	-0.7
2,053,958	+		HGI48_RS09545	0.85	-0.6
2,053,958	+		HGI48_RS09545	0.85	-1.3
2,053,958	+		HGI48_RS09545	0.85	+0.2
2,053,959	-				-1.0
2,053,972	-		HGI48_RS09545	0.86	+0.0
2,054,012	-		HGI48_RS09545	0.89	+0.8
2,054,012	-		HGI48_RS09545	0.89	-1.1
2,054,022	+		HGI48_RS09545	0.90	-2.0
2,054,022	+		HGI48_RS09545	0.90	+1.0
2,054,022	+				+0.6
2,054,125	+				+0.0
2,054,125	+				+0.0
2,054,125	+				-1.5
2,054,125	+				-0.8
2,054,126	-				-1.5
2,054,126	-				-1.5
2,054,245	-				+0.0
2,054,247	-				-1.7
2,054,247	-				-1.8
2,054,255	+				-2.3
2,054,255	+				-1.0
2,054,329	+				+0.1
2,054,329	+				+0.0
2,054,329	+				-0.5
2,054,330	-				-1.0
2,054,330	-				+0.2
2,054,330	-				+0.2
2,054,330	-				+1.8
2,054,330	-				-0.3
2,054,330	-				-0.8
2,054,330	-				-1.3
2,054,330	-				-1.8
2,054,330	-				-1.3
2,054,333	-				-2.0
2,054,333	-				-1.4
2,054,335	-				+0.7
2,054,412	+				+1.7
2,054,412	+				+0.2
2,054,412	+				-0.3
2,054,412	+				+0.0
2,054,412	+				-0.7
2,054,412	+				+0.0
2,054,412	+				-2.0
2,054,412	+				-0.8
2,054,413	-				-1.8
2,054,413	-				+0.3
2,054,413	-				-1.3
2,054,413	-				-1.3
2,054,413	-				+1.6
2,054,413	-				-2.3
2,054,413	-				-0.2
2,054,413	-				+0.0
2,054,413	-				+0.3
2,054,413	-				-1.5
2,054,413	-				-1.8
2,054,413	-				-0.8
2,054,494	+				+1.7
2,054,495	-				-2.7
2,054,570	+				-0.5
2,054,570	+				-1.5
2,054,570	+				-1.3
2,054,570	+				+1.0
2,054,570	+				+1.5
2,054,571	-		HGI48_RS09550	0.10	-0.3
2,054,571	-		HGI48_RS09550	0.10	+1.0
2,054,571	-		HGI48_RS09550	0.10	+1.0
2,054,595	+		HGI48_RS09550	0.12	-0.4
2,054,699	-		HGI48_RS09550	0.23	-0.9
2,054,699	-		HGI48_RS09550	0.23	+1.0
2,054,699	-		HGI48_RS09550	0.23	-0.2
2,054,821	+				+1.0
2,054,822	-		HGI48_RS09550	0.35	+0.7
2,054,822	-		HGI48_RS09550	0.35	-1.0
2,054,822	-		HGI48_RS09550	0.35	-0.5
2,054,822	-		HGI48_RS09550	0.35	-1.4
2,054,822	-		HGI48_RS09550	0.35	+1.6
2,054,832	+		HGI48_RS09550	0.36	+0.2
2,054,834	+		HGI48_RS09550	0.36	-0.9
2,054,834	+		HGI48_RS09550	0.36	-0.2
2,054,834	+				-2.0
2,054,834	+		HGI48_RS09550	0.36	-0.5
2,054,834	+		HGI48_RS09550	0.36	+0.2
2,054,834	+		HGI48_RS09550	0.36	+3.7
2,054,835	-				-1.5
2,054,835	-		HGI48_RS09550	0.36	-0.1
2,054,835	-		HGI48_RS09550	0.36	-1.5
2,054,835	-		HGI48_RS09550	0.36	-0.3
2,054,835	-				+1.0
2,054,835	-		HGI48_RS09550	0.36	-1.8
2,055,138	-		HGI48_RS09550	0.66	-0.5