Experiment: M9+polygalacturonate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02805 and HGI48_RS02810 are separated by 18 nucleotides HGI48_RS02810 and HGI48_RS02815 are separated by 113 nucleotides HGI48_RS02815 and HGI48_RS02820 are separated by 54 nucleotides
HGI48_RS02805: HGI48_RS02805 - tagaturonate reductase, at 604,143 to 605,594
_RS02805
HGI48_RS02810: HGI48_RS02810 - altronate dehydratase, at 605,613 to 607,103
_RS02810
HGI48_RS02815: HGI48_RS02815 - YgjV family protein, at 607,217 to 607,765
_RS02815
HGI48_RS02820: HGI48_RS02820 - TerC family protein, at 607,820 to 608,773
_RS02820
Position (kb) 605
606
607
608 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 604.665 kb on + strand, within HGI48_RS02805 at 604.665 kb on + strand, within HGI48_RS02805 at 604.665 kb on + strand, within HGI48_RS02805 at 604.666 kb on - strand, within HGI48_RS02805 at 604.789 kb on + strand, within HGI48_RS02805 at 604.789 kb on + strand, within HGI48_RS02805 at 604.869 kb on + strand, within HGI48_RS02805 at 604.869 kb on + strand, within HGI48_RS02805 at 604.870 kb on - strand, within HGI48_RS02805 at 604.875 kb on + strand, within HGI48_RS02805 at 604.875 kb on + strand, within HGI48_RS02805 at 604.875 kb on + strand, within HGI48_RS02805 at 604.875 kb on + strand at 604.875 kb on + strand, within HGI48_RS02805 at 604.876 kb on - strand, within HGI48_RS02805 at 604.876 kb on - strand, within HGI48_RS02805 at 604.876 kb on - strand, within HGI48_RS02805 at 604.876 kb on - strand at 604.876 kb on - strand, within HGI48_RS02805 at 604.876 kb on - strand, within HGI48_RS02805 at 604.876 kb on - strand, within HGI48_RS02805 at 604.926 kb on - strand, within HGI48_RS02805 at 604.950 kb on - strand, within HGI48_RS02805 at 604.971 kb on + strand, within HGI48_RS02805 at 605.116 kb on + strand at 605.116 kb on + strand, within HGI48_RS02805 at 605.116 kb on + strand, within HGI48_RS02805 at 605.116 kb on + strand, within HGI48_RS02805 at 605.117 kb on - strand, within HGI48_RS02805 at 605.117 kb on - strand, within HGI48_RS02805 at 605.117 kb on - strand, within HGI48_RS02805 at 605.117 kb on - strand at 605.274 kb on + strand, within HGI48_RS02805 at 605.274 kb on + strand, within HGI48_RS02805 at 605.340 kb on + strand, within HGI48_RS02805 at 605.456 kb on - strand at 605.456 kb on - strand at 605.456 kb on - strand at 605.586 kb on + strand at 605.608 kb on + strand at 605.609 kb on - strand at 605.609 kb on - strand at 605.741 kb on + strand at 605.741 kb on + strand at 605.742 kb on - strand at 605.742 kb on - strand at 605.742 kb on - strand at 605.742 kb on - strand at 605.787 kb on + strand at 605.788 kb on - strand, within HGI48_RS02810 at 605.788 kb on - strand, within HGI48_RS02810 at 605.889 kb on + strand, within HGI48_RS02810 at 605.889 kb on + strand, within HGI48_RS02810 at 605.889 kb on + strand, within HGI48_RS02810 at 605.889 kb on + strand, within HGI48_RS02810 at 605.890 kb on - strand, within HGI48_RS02810 at 605.946 kb on + strand, within HGI48_RS02810 at 606.087 kb on + strand, within HGI48_RS02810 at 606.161 kb on + strand, within HGI48_RS02810 at 606.161 kb on + strand, within HGI48_RS02810 at 606.273 kb on - strand, within HGI48_RS02810 at 606.339 kb on + strand at 606.339 kb on + strand, within HGI48_RS02810 at 606.339 kb on + strand at 606.339 kb on + strand, within HGI48_RS02810 at 606.340 kb on - strand, within HGI48_RS02810 at 606.534 kb on - strand, within HGI48_RS02810 at 606.534 kb on - strand at 606.584 kb on + strand, within HGI48_RS02810 at 606.585 kb on - strand, within HGI48_RS02810 at 606.606 kb on + strand, within HGI48_RS02810 at 606.606 kb on + strand, within HGI48_RS02810 at 606.607 kb on - strand, within HGI48_RS02810 at 606.607 kb on - strand, within HGI48_RS02810 at 606.607 kb on - strand, within HGI48_RS02810 at 606.607 kb on - strand, within HGI48_RS02810 at 606.607 kb on - strand, within HGI48_RS02810 at 606.607 kb on - strand, within HGI48_RS02810 at 606.621 kb on - strand at 606.629 kb on + strand, within HGI48_RS02810 at 606.629 kb on + strand, within HGI48_RS02810 at 606.629 kb on + strand, within HGI48_RS02810 at 606.630 kb on - strand, within HGI48_RS02810 at 606.630 kb on - strand, within HGI48_RS02810 at 606.633 kb on + strand, within HGI48_RS02810 at 606.633 kb on + strand, within HGI48_RS02810 at 606.674 kb on + strand, within HGI48_RS02810 at 606.674 kb on + strand, within HGI48_RS02810 at 606.675 kb on - strand, within HGI48_RS02810 at 606.744 kb on + strand, within HGI48_RS02810 at 606.745 kb on - strand, within HGI48_RS02810 at 606.745 kb on - strand at 606.745 kb on - strand, within HGI48_RS02810 at 606.745 kb on - strand, within HGI48_RS02810 at 606.745 kb on - strand, within HGI48_RS02810 at 606.745 kb on - strand, within HGI48_RS02810 at 606.761 kb on + strand, within HGI48_RS02810 at 606.761 kb on + strand, within HGI48_RS02810 at 606.761 kb on + strand, within HGI48_RS02810 at 607.079 kb on - strand at 607.082 kb on + strand at 607.082 kb on + strand at 607.101 kb on + strand at 607.102 kb on - strand at 607.102 kb on - strand at 607.102 kb on - strand at 607.102 kb on - strand at 607.114 kb on + strand at 607.114 kb on + strand at 607.115 kb on - strand at 607.115 kb on - strand at 607.116 kb on + strand at 607.116 kb on + strand at 607.116 kb on + strand at 607.117 kb on - strand at 607.117 kb on - strand at 607.204 kb on + strand at 607.226 kb on + strand at 607.226 kb on + strand at 607.226 kb on + strand at 607.226 kb on + strand at 607.226 kb on + strand at 607.226 kb on + strand at 607.226 kb on + strand at 607.226 kb on + strand at 607.226 kb on + strand at 607.226 kb on + strand at 607.227 kb on - strand at 607.227 kb on - strand at 607.227 kb on - strand at 607.227 kb on - strand at 607.227 kb on - strand at 607.227 kb on - strand at 607.227 kb on - strand at 607.227 kb on - strand at 607.227 kb on - strand at 607.227 kb on - strand at 607.325 kb on + strand, within HGI48_RS02815 at 607.326 kb on - strand, within HGI48_RS02815 at 607.327 kb on + strand, within HGI48_RS02815 at 607.453 kb on + strand, within HGI48_RS02815 at 607.453 kb on + strand, within HGI48_RS02815 at 607.668 kb on + strand, within HGI48_RS02815 at 607.669 kb on - strand at 607.681 kb on + strand, within HGI48_RS02815 at 607.681 kb on + strand, within HGI48_RS02815 at 607.682 kb on - strand, within HGI48_RS02815 at 607.682 kb on - strand, within HGI48_RS02815 at 607.682 kb on - strand, within HGI48_RS02815 at 607.699 kb on + strand, within HGI48_RS02815 at 607.699 kb on + strand, within HGI48_RS02815 at 607.699 kb on + strand, within HGI48_RS02815 at 607.784 kb on - strand at 607.817 kb on - strand at 607.871 kb on + strand at 607.871 kb on + strand at 607.872 kb on - strand at 607.872 kb on - strand at 607.954 kb on + strand, within HGI48_RS02820 at 607.954 kb on + strand, within HGI48_RS02820 at 607.954 kb on + strand, within HGI48_RS02820 at 607.954 kb on + strand, within HGI48_RS02820 at 607.954 kb on + strand, within HGI48_RS02820 at 607.954 kb on + strand, within HGI48_RS02820 at 607.955 kb on - strand, within HGI48_RS02820 at 607.955 kb on - strand, within HGI48_RS02820 at 607.955 kb on - strand at 607.955 kb on - strand, within HGI48_RS02820 at 607.974 kb on + strand, within HGI48_RS02820 at 607.974 kb on + strand, within HGI48_RS02820 at 608.019 kb on + strand, within HGI48_RS02820 at 608.019 kb on + strand, within HGI48_RS02820 at 608.019 kb on + strand, within HGI48_RS02820 at 608.019 kb on + strand, within HGI48_RS02820 at 608.020 kb on - strand, within HGI48_RS02820 at 608.020 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+polygalacturonate remove 604,665 + HGI48_RS02805 0.36 -1.7 604,665 + HGI48_RS02805 0.36 -0.1 604,665 + HGI48_RS02805 0.36 +1.1 604,666 - HGI48_RS02805 0.36 -0.2 604,789 + HGI48_RS02805 0.44 -0.4 604,789 + HGI48_RS02805 0.44 -0.8 604,869 + HGI48_RS02805 0.50 -1.8 604,869 + HGI48_RS02805 0.50 +0.7 604,870 - HGI48_RS02805 0.50 -0.4 604,875 + HGI48_RS02805 0.50 -0.4 604,875 + HGI48_RS02805 0.50 -0.8 604,875 + HGI48_RS02805 0.50 -1.3 604,875 + +1.0 604,875 + HGI48_RS02805 0.50 -1.4 604,876 - HGI48_RS02805 0.50 -1.0 604,876 - HGI48_RS02805 0.50 -1.6 604,876 - HGI48_RS02805 0.50 -0.4 604,876 - -1.3 604,876 - HGI48_RS02805 0.50 -1.0 604,876 - HGI48_RS02805 0.50 -1.8 604,876 - HGI48_RS02805 0.50 -3.0 604,926 - HGI48_RS02805 0.54 +0.1 604,950 - HGI48_RS02805 0.56 -1.0 604,971 + HGI48_RS02805 0.57 -1.3 605,116 + -1.0 605,116 + HGI48_RS02805 0.67 -0.9 605,116 + HGI48_RS02805 0.67 -0.2 605,116 + HGI48_RS02805 0.67 +1.1 605,117 - HGI48_RS02805 0.67 -0.0 605,117 - HGI48_RS02805 0.67 +2.0 605,117 - HGI48_RS02805 0.67 -0.4 605,117 - -1.3 605,274 + HGI48_RS02805 0.78 +1.1 605,274 + HGI48_RS02805 0.78 -0.4 605,340 + HGI48_RS02805 0.82 -0.4 605,456 - -1.6 605,456 - -0.8 605,456 - -0.0 605,586 + -0.8 605,608 + +1.6 605,609 - +0.6 605,609 - -0.4 605,741 + -1.3 605,741 + +0.4 605,742 - -1.2 605,742 - -1.0 605,742 - -0.0 605,742 - -1.6 605,787 + -1.0 605,788 - HGI48_RS02810 0.12 -1.3 605,788 - HGI48_RS02810 0.12 -3.1 605,889 + HGI48_RS02810 0.19 -0.3 605,889 + HGI48_RS02810 0.19 -1.6 605,889 + HGI48_RS02810 0.19 -2.3 605,889 + HGI48_RS02810 0.19 -2.5 605,890 - HGI48_RS02810 0.19 -1.9 605,946 + HGI48_RS02810 0.22 -1.0 606,087 + HGI48_RS02810 0.32 -1.2 606,161 + HGI48_RS02810 0.37 -0.8 606,161 + HGI48_RS02810 0.37 -0.7 606,273 - HGI48_RS02810 0.44 -0.0 606,339 + -1.5 606,339 + HGI48_RS02810 0.49 -1.6 606,339 + -1.0 606,339 + HGI48_RS02810 0.49 -2.5 606,340 - HGI48_RS02810 0.49 -2.2 606,534 - HGI48_RS02810 0.62 -2.3 606,534 - -0.8 606,584 + HGI48_RS02810 0.65 -1.2 606,585 - HGI48_RS02810 0.65 -0.6 606,606 + HGI48_RS02810 0.67 -1.8 606,606 + HGI48_RS02810 0.67 -0.1 606,607 - HGI48_RS02810 0.67 -2.3 606,607 - HGI48_RS02810 0.67 -1.3 606,607 - HGI48_RS02810 0.67 -1.5 606,607 - HGI48_RS02810 0.67 -2.4 606,607 - HGI48_RS02810 0.67 -1.3 606,607 - HGI48_RS02810 0.67 -0.8 606,621 - +0.2 606,629 + HGI48_RS02810 0.68 -0.9 606,629 + HGI48_RS02810 0.68 -2.9 606,629 + HGI48_RS02810 0.68 -1.5 606,630 - HGI48_RS02810 0.68 -0.0 606,630 - HGI48_RS02810 0.68 -0.8 606,633 + HGI48_RS02810 0.68 -0.6 606,633 + HGI48_RS02810 0.68 -1.5 606,674 + HGI48_RS02810 0.71 +1.2 606,674 + HGI48_RS02810 0.71 -2.5 606,675 - HGI48_RS02810 0.71 -2.8 606,744 + HGI48_RS02810 0.76 -1.0 606,745 - HGI48_RS02810 0.76 -1.0 606,745 - -1.8 606,745 - HGI48_RS02810 0.76 -1.0 606,745 - HGI48_RS02810 0.76 -0.2 606,745 - HGI48_RS02810 0.76 -1.6 606,745 - HGI48_RS02810 0.76 -2.9 606,761 + HGI48_RS02810 0.77 -0.5 606,761 + HGI48_RS02810 0.77 -1.6 606,761 + HGI48_RS02810 0.77 +1.2 607,079 - -0.5 607,082 + +0.3 607,082 + -1.0 607,101 + -2.0 607,102 - -0.8 607,102 - +0.5 607,102 - +0.4 607,102 - +0.3 607,114 + -0.8 607,114 + -2.6 607,115 - -0.8 607,115 - +0.8 607,116 + -0.8 607,116 + +1.1 607,116 + +0.1 607,117 - -0.0 607,117 - -0.5 607,204 + +0.6 607,226 + -0.9 607,226 + +0.5 607,226 + +0.7 607,226 + -0.8 607,226 + -0.6 607,226 + -1.0 607,226 + -0.5 607,226 + -1.0 607,226 + -0.5 607,226 + +1.4 607,227 - +1.8 607,227 - +2.3 607,227 - -1.3 607,227 - +0.5 607,227 - +0.3 607,227 - +0.6 607,227 - +2.3 607,227 - -1.6 607,227 - -0.5 607,227 - +0.5 607,325 + HGI48_RS02815 0.20 -0.2 607,326 - HGI48_RS02815 0.20 -1.6 607,327 + HGI48_RS02815 0.20 -0.0 607,453 + HGI48_RS02815 0.43 -0.7 607,453 + HGI48_RS02815 0.43 -1.0 607,668 + HGI48_RS02815 0.82 -1.0 607,669 - +1.3 607,681 + HGI48_RS02815 0.85 -0.1 607,681 + HGI48_RS02815 0.85 -0.5 607,682 - HGI48_RS02815 0.85 +1.9 607,682 - HGI48_RS02815 0.85 -0.5 607,682 - HGI48_RS02815 0.85 -0.3 607,699 + HGI48_RS02815 0.88 +0.7 607,699 + HGI48_RS02815 0.88 -0.8 607,699 + HGI48_RS02815 0.88 +1.5 607,784 - -2.3 607,817 - -0.6 607,871 + -0.0 607,871 + +1.8 607,872 - +0.5 607,872 - +0.5 607,954 + HGI48_RS02820 0.14 -1.3 607,954 + HGI48_RS02820 0.14 +0.2 607,954 + HGI48_RS02820 0.14 +0.3 607,954 + HGI48_RS02820 0.14 -0.1 607,954 + HGI48_RS02820 0.14 +0.3 607,954 + HGI48_RS02820 0.14 -1.8 607,955 - HGI48_RS02820 0.14 -0.9 607,955 - HGI48_RS02820 0.14 -0.9 607,955 - -1.1 607,955 - HGI48_RS02820 0.14 +0.1 607,974 + HGI48_RS02820 0.16 +1.3 607,974 + HGI48_RS02820 0.16 -1.8 608,019 + HGI48_RS02820 0.21 -0.8 608,019 + HGI48_RS02820 0.21 -1.1 608,019 + HGI48_RS02820 0.21 +0.3 608,019 + HGI48_RS02820 0.21 -1.1 608,020 - HGI48_RS02820 0.21 +2.3 608,020 - -1.8
Or see this region's nucleotide sequence