Experiment: M9+polygalacturonate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01250 and HGI48_RS01255 are separated by 71 nucleotides HGI48_RS01255 and HGI48_RS01260 are separated by 519 nucleotides
HGI48_RS01250: HGI48_RS01250 - amino acid ABC transporter permease, at 279,944 to 281,122
_RS01250
HGI48_RS01255: HGI48_RS01255 - amino acid ABC transporter substrate-binding protein, at 281,194 to 282,219
_RS01255
HGI48_RS01260: HGI48_RS01260 - amino acid ABC transporter permease, at 282,739 to 283,404
_RS01260
Position (kb) 281
282
283 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 280.260 kb on + strand, within HGI48_RS01250 at 280.260 kb on + strand, within HGI48_RS01250 at 280.312 kb on + strand, within HGI48_RS01250 at 280.312 kb on + strand, within HGI48_RS01250 at 280.312 kb on + strand, within HGI48_RS01250 at 280.312 kb on + strand, within HGI48_RS01250 at 280.312 kb on + strand, within HGI48_RS01250 at 280.312 kb on + strand, within HGI48_RS01250 at 280.313 kb on - strand, within HGI48_RS01250 at 280.313 kb on - strand, within HGI48_RS01250 at 280.313 kb on - strand, within HGI48_RS01250 at 280.313 kb on - strand, within HGI48_RS01250 at 280.313 kb on - strand, within HGI48_RS01250 at 280.313 kb on - strand, within HGI48_RS01250 at 280.313 kb on - strand, within HGI48_RS01250 at 280.313 kb on - strand, within HGI48_RS01250 at 280.313 kb on - strand, within HGI48_RS01250 at 280.313 kb on - strand at 280.313 kb on - strand, within HGI48_RS01250 at 280.314 kb on + strand, within HGI48_RS01250 at 280.314 kb on + strand, within HGI48_RS01250 at 280.314 kb on + strand, within HGI48_RS01250 at 280.314 kb on + strand, within HGI48_RS01250 at 280.314 kb on + strand, within HGI48_RS01250 at 280.315 kb on - strand, within HGI48_RS01250 at 280.315 kb on - strand, within HGI48_RS01250 at 280.315 kb on - strand, within HGI48_RS01250 at 280.315 kb on - strand, within HGI48_RS01250 at 280.315 kb on - strand, within HGI48_RS01250 at 280.466 kb on + strand, within HGI48_RS01250 at 280.467 kb on - strand, within HGI48_RS01250 at 280.509 kb on + strand at 280.509 kb on + strand, within HGI48_RS01250 at 280.509 kb on + strand at 280.509 kb on + strand, within HGI48_RS01250 at 280.509 kb on + strand, within HGI48_RS01250 at 280.510 kb on - strand, within HGI48_RS01250 at 280.516 kb on + strand, within HGI48_RS01250 at 280.517 kb on - strand, within HGI48_RS01250 at 280.517 kb on - strand, within HGI48_RS01250 at 280.552 kb on + strand, within HGI48_RS01250 at 280.552 kb on + strand, within HGI48_RS01250 at 280.553 kb on - strand, within HGI48_RS01250 at 280.553 kb on - strand, within HGI48_RS01250 at 280.553 kb on - strand, within HGI48_RS01250 at 280.553 kb on - strand at 280.553 kb on - strand, within HGI48_RS01250 at 280.553 kb on - strand, within HGI48_RS01250 at 280.609 kb on + strand, within HGI48_RS01250 at 280.610 kb on - strand, within HGI48_RS01250 at 280.611 kb on + strand, within HGI48_RS01250 at 280.611 kb on + strand, within HGI48_RS01250 at 280.611 kb on + strand, within HGI48_RS01250 at 280.611 kb on + strand, within HGI48_RS01250 at 280.611 kb on + strand, within HGI48_RS01250 at 280.611 kb on + strand, within HGI48_RS01250 at 280.611 kb on + strand, within HGI48_RS01250 at 280.612 kb on - strand, within HGI48_RS01250 at 280.612 kb on - strand, within HGI48_RS01250 at 280.612 kb on - strand, within HGI48_RS01250 at 280.612 kb on - strand, within HGI48_RS01250 at 280.612 kb on - strand, within HGI48_RS01250 at 280.612 kb on - strand, within HGI48_RS01250 at 280.612 kb on - strand, within HGI48_RS01250 at 280.640 kb on - strand, within HGI48_RS01250 at 280.695 kb on + strand, within HGI48_RS01250 at 280.695 kb on + strand, within HGI48_RS01250 at 280.696 kb on - strand, within HGI48_RS01250 at 280.696 kb on - strand at 280.746 kb on + strand, within HGI48_RS01250 at 280.746 kb on + strand, within HGI48_RS01250 at 280.746 kb on + strand, within HGI48_RS01250 at 280.746 kb on + strand, within HGI48_RS01250 at 280.747 kb on - strand, within HGI48_RS01250 at 280.747 kb on - strand, within HGI48_RS01250 at 280.747 kb on - strand, within HGI48_RS01250 at 280.747 kb on - strand, within HGI48_RS01250 at 280.762 kb on + strand, within HGI48_RS01250 at 280.763 kb on - strand, within HGI48_RS01250 at 280.763 kb on - strand at 280.804 kb on + strand, within HGI48_RS01250 at 280.804 kb on + strand, within HGI48_RS01250 at 280.804 kb on + strand at 280.805 kb on - strand, within HGI48_RS01250 at 280.805 kb on - strand, within HGI48_RS01250 at 280.805 kb on - strand, within HGI48_RS01250 at 280.831 kb on + strand at 280.831 kb on + strand, within HGI48_RS01250 at 280.832 kb on - strand, within HGI48_RS01250 at 280.837 kb on + strand, within HGI48_RS01250 at 280.888 kb on - strand at 280.891 kb on + strand, within HGI48_RS01250 at 280.891 kb on + strand, within HGI48_RS01250 at 280.891 kb on + strand, within HGI48_RS01250 at 280.892 kb on - strand at 280.905 kb on + strand, within HGI48_RS01250 at 280.905 kb on + strand, within HGI48_RS01250 at 280.906 kb on - strand, within HGI48_RS01250 at 280.927 kb on + strand, within HGI48_RS01250 at 280.945 kb on + strand, within HGI48_RS01250 at 280.969 kb on + strand, within HGI48_RS01250 at 280.995 kb on - strand, within HGI48_RS01250 at 281.014 kb on - strand at 281.014 kb on - strand at 281.014 kb on - strand at 281.014 kb on - strand at 281.048 kb on + strand at 281.049 kb on - strand at 281.055 kb on + strand at 281.055 kb on + strand at 281.056 kb on - strand at 281.080 kb on + strand at 281.081 kb on - strand at 281.090 kb on + strand at 281.090 kb on + strand at 281.090 kb on + strand at 281.090 kb on + strand at 281.091 kb on - strand at 281.091 kb on - strand at 281.091 kb on - strand at 281.091 kb on - strand at 281.091 kb on - strand at 281.143 kb on + strand at 281.184 kb on + strand at 281.185 kb on - strand at 281.185 kb on - strand at 281.186 kb on + strand at 281.186 kb on + strand at 281.187 kb on - strand at 281.187 kb on - strand at 281.187 kb on - strand at 281.213 kb on + strand at 281.281 kb on + strand at 281.281 kb on + strand at 281.282 kb on - strand at 281.282 kb on - strand at 281.282 kb on - strand at 281.307 kb on - strand, within HGI48_RS01255 at 281.307 kb on - strand, within HGI48_RS01255 at 281.369 kb on + strand, within HGI48_RS01255 at 281.370 kb on - strand, within HGI48_RS01255 at 281.370 kb on - strand, within HGI48_RS01255 at 281.556 kb on + strand, within HGI48_RS01255 at 281.556 kb on + strand at 281.557 kb on - strand at 281.612 kb on + strand, within HGI48_RS01255 at 281.613 kb on - strand, within HGI48_RS01255 at 281.705 kb on + strand, within HGI48_RS01255 at 281.705 kb on + strand, within HGI48_RS01255 at 281.706 kb on - strand, within HGI48_RS01255 at 281.729 kb on + strand, within HGI48_RS01255 at 281.729 kb on + strand, within HGI48_RS01255 at 281.730 kb on - strand at 281.846 kb on + strand, within HGI48_RS01255 at 281.846 kb on + strand, within HGI48_RS01255 at 281.846 kb on + strand, within HGI48_RS01255 at 281.846 kb on + strand at 281.847 kb on - strand, within HGI48_RS01255 at 281.847 kb on - strand, within HGI48_RS01255 at 281.847 kb on - strand, within HGI48_RS01255 at 281.847 kb on - strand, within HGI48_RS01255 at 281.847 kb on - strand, within HGI48_RS01255 at 281.849 kb on + strand, within HGI48_RS01255 at 281.849 kb on + strand at 281.849 kb on + strand at 281.849 kb on + strand, within HGI48_RS01255 at 281.850 kb on - strand, within HGI48_RS01255 at 281.850 kb on - strand, within HGI48_RS01255 at 281.850 kb on - strand, within HGI48_RS01255 at 281.850 kb on - strand, within HGI48_RS01255 at 281.850 kb on - strand, within HGI48_RS01255 at 282.051 kb on - strand, within HGI48_RS01255 at 282.051 kb on - strand, within HGI48_RS01255 at 282.099 kb on + strand, within HGI48_RS01255 at 282.204 kb on + strand at 282.204 kb on + strand at 282.204 kb on + strand at 282.205 kb on - strand at 282.205 kb on - strand at 282.228 kb on + strand at 282.228 kb on + strand at 282.228 kb on + strand at 282.228 kb on + strand at 282.228 kb on + strand at 282.228 kb on + strand at 282.228 kb on + strand at 282.228 kb on + strand at 282.229 kb on - strand at 282.229 kb on - strand at 282.229 kb on - strand at 282.236 kb on + strand at 282.236 kb on + strand at 282.236 kb on + strand at 282.241 kb on + strand at 282.241 kb on + strand at 282.241 kb on + strand at 282.241 kb on + strand at 282.241 kb on + strand at 282.242 kb on - strand at 282.242 kb on - strand at 282.244 kb on + strand at 282.244 kb on + strand at 282.244 kb on + strand at 282.244 kb on + strand at 282.244 kb on + strand at 282.245 kb on - strand at 282.245 kb on - strand at 282.245 kb on - strand at 282.245 kb on - strand at 282.247 kb on + strand at 282.247 kb on + strand at 282.248 kb on - strand at 282.248 kb on - strand at 282.248 kb on - strand at 282.248 kb on - strand at 282.248 kb on - strand at 282.248 kb on - strand at 282.359 kb on + strand at 282.371 kb on + strand at 282.371 kb on + strand at 282.386 kb on - strand at 282.432 kb on + strand at 282.445 kb on + strand at 282.446 kb on - strand at 282.500 kb on + strand at 282.500 kb on + strand at 282.500 kb on + strand at 282.500 kb on + strand at 282.501 kb on - strand at 282.501 kb on - strand at 282.501 kb on - strand at 282.501 kb on - strand at 282.504 kb on + strand at 282.519 kb on + strand at 282.519 kb on + strand at 282.569 kb on - strand at 282.581 kb on + strand at 282.585 kb on + strand at 282.585 kb on + strand at 282.585 kb on + strand at 282.586 kb on - strand at 282.586 kb on - strand at 282.586 kb on - strand at 282.586 kb on - strand at 282.586 kb on - strand at 282.594 kb on + strand at 282.701 kb on + strand at 282.702 kb on - strand at 282.762 kb on - strand at 282.764 kb on + strand at 282.765 kb on - strand at 282.765 kb on - strand at 282.796 kb on + strand at 282.797 kb on - strand at 282.805 kb on - strand at 282.805 kb on - strand at 282.805 kb on - strand at 282.805 kb on - strand at 282.816 kb on - strand, within HGI48_RS01260 at 282.834 kb on + strand, within HGI48_RS01260 at 282.837 kb on - strand, within HGI48_RS01260 at 282.855 kb on - strand, within HGI48_RS01260 at 282.871 kb on - strand, within HGI48_RS01260 at 282.942 kb on + strand at 282.942 kb on + strand at 282.949 kb on - strand at 282.949 kb on - strand, within HGI48_RS01260 at 283.035 kb on - strand, within HGI48_RS01260 at 283.098 kb on - strand, within HGI48_RS01260 at 283.175 kb on + strand, within HGI48_RS01260
Per-strain Table
Position Strand Gene LocusTag Fraction M9+polygalacturonate remove 280,260 + HGI48_RS01250 0.27 +0.5 280,260 + HGI48_RS01250 0.27 -1.5 280,312 + HGI48_RS01250 0.31 -1.5 280,312 + HGI48_RS01250 0.31 -0.6 280,312 + HGI48_RS01250 0.31 +0.7 280,312 + HGI48_RS01250 0.31 -0.9 280,312 + HGI48_RS01250 0.31 -1.3 280,312 + HGI48_RS01250 0.31 +1.6 280,313 - HGI48_RS01250 0.31 +1.3 280,313 - HGI48_RS01250 0.31 -1.1 280,313 - HGI48_RS01250 0.31 -0.2 280,313 - HGI48_RS01250 0.31 +0.7 280,313 - HGI48_RS01250 0.31 +0.5 280,313 - HGI48_RS01250 0.31 -0.9 280,313 - HGI48_RS01250 0.31 -0.4 280,313 - HGI48_RS01250 0.31 +1.0 280,313 - HGI48_RS01250 0.31 -1.5 280,313 - -0.6 280,313 - HGI48_RS01250 0.31 -0.9 280,314 + HGI48_RS01250 0.31 +0.5 280,314 + HGI48_RS01250 0.31 -0.0 280,314 + HGI48_RS01250 0.31 +0.3 280,314 + HGI48_RS01250 0.31 -0.6 280,314 + HGI48_RS01250 0.31 -0.9 280,315 - HGI48_RS01250 0.31 +0.0 280,315 - HGI48_RS01250 0.31 -0.7 280,315 - HGI48_RS01250 0.31 +1.0 280,315 - HGI48_RS01250 0.31 +0.7 280,315 - HGI48_RS01250 0.31 +0.3 280,466 + HGI48_RS01250 0.44 +2.0 280,467 - HGI48_RS01250 0.44 +1.3 280,509 + -0.9 280,509 + HGI48_RS01250 0.48 -1.1 280,509 + +1.1 280,509 + HGI48_RS01250 0.48 -0.2 280,509 + HGI48_RS01250 0.48 -0.6 280,510 - HGI48_RS01250 0.48 -0.3 280,516 + HGI48_RS01250 0.49 +0.4 280,517 - HGI48_RS01250 0.49 +0.5 280,517 - HGI48_RS01250 0.49 -0.9 280,552 + HGI48_RS01250 0.52 -0.7 280,552 + HGI48_RS01250 0.52 -1.1 280,553 - HGI48_RS01250 0.52 +0.1 280,553 - HGI48_RS01250 0.52 +0.4 280,553 - HGI48_RS01250 0.52 +0.2 280,553 - +1.7 280,553 - HGI48_RS01250 0.52 +1.5 280,553 - HGI48_RS01250 0.52 -0.3 280,609 + HGI48_RS01250 0.56 +0.9 280,610 - HGI48_RS01250 0.56 +1.9 280,611 + HGI48_RS01250 0.57 -1.0 280,611 + HGI48_RS01250 0.57 -0.6 280,611 + HGI48_RS01250 0.57 +0.5 280,611 + HGI48_RS01250 0.57 -0.0 280,611 + HGI48_RS01250 0.57 +0.2 280,611 + HGI48_RS01250 0.57 +0.7 280,611 + HGI48_RS01250 0.57 -0.6 280,612 - HGI48_RS01250 0.57 +0.3 280,612 - HGI48_RS01250 0.57 +0.4 280,612 - HGI48_RS01250 0.57 +0.7 280,612 - HGI48_RS01250 0.57 -0.6 280,612 - HGI48_RS01250 0.57 -2.7 280,612 - HGI48_RS01250 0.57 -0.0 280,612 - HGI48_RS01250 0.57 -0.4 280,640 - HGI48_RS01250 0.59 +0.3 280,695 + HGI48_RS01250 0.64 -0.2 280,695 + HGI48_RS01250 0.64 -1.9 280,696 - HGI48_RS01250 0.64 +1.8 280,696 - +1.5 280,746 + HGI48_RS01250 0.68 +0.7 280,746 + HGI48_RS01250 0.68 -0.1 280,746 + HGI48_RS01250 0.68 -1.5 280,746 + HGI48_RS01250 0.68 -0.2 280,747 - HGI48_RS01250 0.68 +0.1 280,747 - HGI48_RS01250 0.68 +1.0 280,747 - HGI48_RS01250 0.68 +1.5 280,747 - HGI48_RS01250 0.68 +0.7 280,762 + HGI48_RS01250 0.69 -0.3 280,763 - HGI48_RS01250 0.69 -0.9 280,763 - -0.3 280,804 + HGI48_RS01250 0.73 +0.7 280,804 + HGI48_RS01250 0.73 -0.6 280,804 + -1.1 280,805 - HGI48_RS01250 0.73 -0.4 280,805 - HGI48_RS01250 0.73 -1.2 280,805 - HGI48_RS01250 0.73 +0.5 280,831 + +2.4 280,831 + HGI48_RS01250 0.75 -0.1 280,832 - HGI48_RS01250 0.75 -0.3 280,837 + HGI48_RS01250 0.76 -0.2 280,888 - +1.5 280,891 + HGI48_RS01250 0.80 -2.2 280,891 + HGI48_RS01250 0.80 -0.9 280,891 + HGI48_RS01250 0.80 -0.1 280,892 - +0.9 280,905 + HGI48_RS01250 0.82 +0.7 280,905 + HGI48_RS01250 0.82 +2.4 280,906 - HGI48_RS01250 0.82 -0.6 280,927 + HGI48_RS01250 0.83 -0.0 280,945 + HGI48_RS01250 0.85 -0.3 280,969 + HGI48_RS01250 0.87 +0.1 280,995 - HGI48_RS01250 0.89 +0.5 281,014 - +0.6 281,014 - -0.1 281,014 - -0.0 281,014 - -0.1 281,048 + +2.0 281,049 - +1.9 281,055 + -1.1 281,055 + +0.3 281,056 - +1.7 281,080 + +0.7 281,081 - -0.5 281,090 + -0.3 281,090 + -1.3 281,090 + +1.1 281,090 + -0.9 281,091 - -1.1 281,091 - -0.9 281,091 - -0.6 281,091 - -0.3 281,091 - +0.3 281,143 + -1.3 281,184 + -0.6 281,185 - +0.3 281,185 - -0.2 281,186 + -0.1 281,186 + -2.4 281,187 - -0.0 281,187 - +1.6 281,187 - +0.7 281,213 + +0.9 281,281 + -1.5 281,281 + -1.4 281,282 - -3.0 281,282 - -0.3 281,282 - +1.2 281,307 - HGI48_RS01255 0.11 -0.4 281,307 - HGI48_RS01255 0.11 +0.1 281,369 + HGI48_RS01255 0.17 +0.6 281,370 - HGI48_RS01255 0.17 -0.8 281,370 - HGI48_RS01255 0.17 +0.0 281,556 + HGI48_RS01255 0.35 +0.7 281,556 + +0.3 281,557 - +0.1 281,612 + HGI48_RS01255 0.41 +0.5 281,613 - HGI48_RS01255 0.41 -1.6 281,705 + HGI48_RS01255 0.50 -0.1 281,705 + HGI48_RS01255 0.50 +1.7 281,706 - HGI48_RS01255 0.50 +1.5 281,729 + HGI48_RS01255 0.52 -0.9 281,729 + HGI48_RS01255 0.52 +1.0 281,730 - -0.9 281,846 + HGI48_RS01255 0.64 +2.4 281,846 + HGI48_RS01255 0.64 +3.0 281,846 + HGI48_RS01255 0.64 +0.5 281,846 + -1.3 281,847 - HGI48_RS01255 0.64 +0.1 281,847 - HGI48_RS01255 0.64 +0.5 281,847 - HGI48_RS01255 0.64 +0.9 281,847 - HGI48_RS01255 0.64 +0.1 281,847 - HGI48_RS01255 0.64 -0.3 281,849 + HGI48_RS01255 0.64 -0.3 281,849 + -1.9 281,849 + +1.5 281,849 + HGI48_RS01255 0.64 +0.3 281,850 - HGI48_RS01255 0.64 -1.4 281,850 - HGI48_RS01255 0.64 +0.9 281,850 - HGI48_RS01255 0.64 +0.3 281,850 - HGI48_RS01255 0.64 -0.3 281,850 - HGI48_RS01255 0.64 +1.7 282,051 - HGI48_RS01255 0.84 +1.2 282,051 - HGI48_RS01255 0.84 +2.0 282,099 + HGI48_RS01255 0.88 -1.1 282,204 + -0.3 282,204 + +0.5 282,204 + +0.7 282,205 - +0.4 282,205 - +1.7 282,228 + +0.1 282,228 + -0.3 282,228 + -1.7 282,228 + +0.5 282,228 + -0.6 282,228 + +0.3 282,228 + +2.3 282,228 + +1.0 282,229 - +0.1 282,229 - -1.3 282,229 - -1.5 282,236 + +2.0 282,236 + -0.3 282,236 + -0.5 282,241 + +1.5 282,241 + -0.8 282,241 + -0.1 282,241 + +1.0 282,241 + +1.3 282,242 - +0.7 282,242 - -1.5 282,244 + -0.2 282,244 + +1.0 282,244 + -1.0 282,244 + -0.6 282,244 + +0.5 282,245 - +0.1 282,245 - -0.4 282,245 - -1.6 282,245 - -0.7 282,247 + +0.4 282,247 + +0.5 282,248 - +0.2 282,248 - +0.1 282,248 - +1.9 282,248 - -0.8 282,248 - +1.7 282,248 - +0.4 282,359 + +1.1 282,371 + +0.3 282,371 + +1.4 282,386 - +0.7 282,432 + +0.0 282,445 + +1.7 282,446 - -1.1 282,500 + -1.5 282,500 + +1.5 282,500 + -1.3 282,500 + -1.3 282,501 - -1.1 282,501 - -0.7 282,501 - -0.3 282,501 - -1.8 282,504 + -0.6 282,519 + +1.0 282,519 + +0.1 282,569 - -2.4 282,581 + -0.9 282,585 + -0.2 282,585 + +1.4 282,585 + -1.2 282,586 - +0.8 282,586 - -0.9 282,586 - +0.0 282,586 - +0.1 282,586 - +0.1 282,594 + -0.2 282,701 + -1.5 282,702 - +0.7 282,762 - +0.4 282,764 + +0.8 282,765 - +0.7 282,765 - -0.5 282,796 + +0.9 282,797 - -0.6 282,805 - -0.3 282,805 - -0.5 282,805 - -0.9 282,805 - +0.7 282,816 - HGI48_RS01260 0.12 -0.3 282,834 + HGI48_RS01260 0.14 +0.1 282,837 - HGI48_RS01260 0.15 +2.1 282,855 - HGI48_RS01260 0.17 -2.1 282,871 - HGI48_RS01260 0.20 -0.2 282,942 + +0.3 282,942 + +0.6 282,949 - -0.1 282,949 - HGI48_RS01260 0.32 +0.3 283,035 - HGI48_RS01260 0.44 -0.6 283,098 - HGI48_RS01260 0.54 +0.2 283,175 + HGI48_RS01260 0.65 -0.9
Or see this region's nucleotide sequence