Experiment: M9+polygalacturonate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00650 and HGI48_RS00655 are separated by 20 nucleotides HGI48_RS00655 and HGI48_RS00660 are separated by 4 nucleotides HGI48_RS00660 and HGI48_RS00665 are separated by 248 nucleotides HGI48_RS00665 and HGI48_RS00670 are separated by 6 nucleotides
HGI48_RS00650: HGI48_RS00650 - ABC transporter ATP-binding protein, at 153,897 to 155,801
_RS00650
HGI48_RS00655: HGI48_RS00655 - L-Ala-D/L-Glu epimerase, at 155,822 to 156,787
_RS00655
HGI48_RS00660: HGI48_RS00660 - DUF1611 domain-containing protein, at 156,792 to 157,799
_RS00660
HGI48_RS00665: HGI48_RS00665 - DUF202 domain-containing protein, at 158,048 to 158,386
_RS00665
HGI48_RS00670: HGI48_RS00670 - DUF202 domain-containing protein, at 158,393 to 158,785
_RS00670
Position (kb) 156
157
158 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 155.847 kb on + strand at 155.847 kb on + strand at 155.847 kb on + strand at 155.847 kb on + strand at 155.847 kb on + strand at 155.847 kb on + strand at 155.847 kb on + strand at 155.847 kb on + strand at 155.847 kb on + strand at 155.847 kb on + strand at 155.847 kb on + strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.930 kb on - strand, within HGI48_RS00655 at 156.005 kb on + strand, within HGI48_RS00655 at 156.067 kb on - strand at 156.398 kb on + strand, within HGI48_RS00655 at 156.398 kb on + strand, within HGI48_RS00655 at 156.399 kb on - strand, within HGI48_RS00655 at 156.399 kb on - strand, within HGI48_RS00655 at 156.503 kb on + strand, within HGI48_RS00655 at 156.503 kb on + strand at 156.794 kb on - strand at 156.794 kb on - strand at 156.819 kb on + strand at 156.819 kb on + strand at 156.819 kb on + strand at 156.819 kb on + strand at 156.819 kb on + strand at 156.820 kb on - strand at 156.821 kb on + strand at 156.821 kb on + strand at 156.821 kb on + strand at 156.821 kb on + strand at 156.822 kb on - strand at 156.822 kb on - strand at 156.822 kb on - strand at 156.822 kb on - strand at 156.822 kb on - strand at 156.822 kb on - strand at 156.889 kb on + strand at 156.913 kb on + strand, within HGI48_RS00660 at 156.914 kb on - strand, within HGI48_RS00660 at 157.094 kb on + strand, within HGI48_RS00660 at 157.117 kb on + strand, within HGI48_RS00660 at 157.311 kb on - strand, within HGI48_RS00660 at 157.311 kb on - strand, within HGI48_RS00660 at 157.336 kb on + strand, within HGI48_RS00660 at 157.336 kb on + strand, within HGI48_RS00660 at 157.336 kb on + strand, within HGI48_RS00660 at 157.337 kb on - strand, within HGI48_RS00660 at 157.337 kb on - strand, within HGI48_RS00660 at 157.337 kb on - strand, within HGI48_RS00660 at 157.449 kb on + strand, within HGI48_RS00660 at 157.449 kb on + strand, within HGI48_RS00660 at 157.450 kb on - strand, within HGI48_RS00660 at 157.614 kb on - strand, within HGI48_RS00660 at 157.725 kb on - strand at 157.780 kb on + strand at 157.780 kb on + strand at 157.780 kb on + strand at 157.781 kb on - strand at 157.781 kb on - strand at 157.781 kb on - strand at 157.832 kb on - strand at 157.839 kb on + strand at 157.840 kb on - strand at 157.843 kb on + strand at 157.843 kb on + strand at 157.843 kb on + strand at 157.843 kb on + strand at 157.843 kb on + strand at 157.843 kb on + strand at 157.843 kb on + strand at 157.843 kb on + strand at 157.843 kb on + strand at 157.843 kb on + strand at 157.844 kb on - strand at 157.844 kb on - strand at 157.844 kb on - strand at 157.844 kb on - strand at 157.844 kb on - strand at 157.844 kb on - strand at 157.844 kb on - strand at 157.844 kb on - strand at 157.844 kb on - strand at 157.844 kb on - strand at 157.849 kb on + strand at 157.850 kb on - strand at 157.896 kb on + strand at 157.897 kb on - strand at 157.898 kb on + strand at 157.899 kb on - strand at 157.899 kb on - strand at 157.987 kb on - strand at 158.017 kb on + strand at 158.018 kb on - strand at 158.078 kb on + strand at 158.108 kb on + strand, within HGI48_RS00665 at 158.188 kb on + strand, within HGI48_RS00665 at 158.188 kb on + strand, within HGI48_RS00665 at 158.189 kb on - strand at 158.189 kb on - strand, within HGI48_RS00665 at 158.190 kb on + strand, within HGI48_RS00665 at 158.190 kb on + strand, within HGI48_RS00665 at 158.190 kb on + strand, within HGI48_RS00665 at 158.190 kb on + strand, within HGI48_RS00665 at 158.190 kb on + strand, within HGI48_RS00665 at 158.190 kb on + strand, within HGI48_RS00665 at 158.190 kb on + strand, within HGI48_RS00665 at 158.190 kb on + strand at 158.190 kb on + strand, within HGI48_RS00665 at 158.190 kb on + strand, within HGI48_RS00665 at 158.191 kb on - strand, within HGI48_RS00665 at 158.191 kb on - strand, within HGI48_RS00665 at 158.191 kb on - strand, within HGI48_RS00665 at 158.191 kb on - strand, within HGI48_RS00665 at 158.191 kb on - strand, within HGI48_RS00665 at 158.191 kb on - strand, within HGI48_RS00665 at 158.191 kb on - strand, within HGI48_RS00665 at 158.191 kb on - strand, within HGI48_RS00665 at 158.191 kb on - strand, within HGI48_RS00665 at 158.191 kb on - strand, within HGI48_RS00665 at 158.395 kb on - strand at 158.395 kb on - strand at 158.395 kb on - strand at 158.471 kb on - strand, within HGI48_RS00670 at 158.471 kb on - strand, within HGI48_RS00670 at 158.473 kb on - strand, within HGI48_RS00670
Per-strain Table
Position Strand Gene LocusTag Fraction M9+polygalacturonate remove 155,847 + -1.6 155,847 + -0.8 155,847 + +1.5 155,847 + -1.4 155,847 + -1.2 155,847 + -0.1 155,847 + +0.4 155,847 + +0.2 155,847 + -1.0 155,847 + -0.7 155,847 + -0.2 155,848 - +2.8 155,848 - -1.7 155,848 - +0.4 155,848 - +1.9 155,848 - +1.2 155,848 - -0.0 155,848 - -1.2 155,848 - +0.2 155,848 - +0.2 155,848 - -1.8 155,848 - +0.8 155,848 - -0.2 155,848 - -1.7 155,930 - HGI48_RS00655 0.11 -0.8 156,005 + HGI48_RS00655 0.19 -0.3 156,067 - -0.5 156,398 + HGI48_RS00655 0.60 +0.2 156,398 + HGI48_RS00655 0.60 -0.2 156,399 - HGI48_RS00655 0.60 +2.1 156,399 - HGI48_RS00655 0.60 -1.9 156,503 + HGI48_RS00655 0.70 -1.0 156,503 + -0.2 156,794 - +0.1 156,794 - +1.1 156,819 + -0.8 156,819 + -0.3 156,819 + +0.2 156,819 + -0.3 156,819 + -1.9 156,820 - +1.5 156,821 + +0.8 156,821 + +0.5 156,821 + +3.4 156,821 + -0.5 156,822 - -0.5 156,822 - +0.9 156,822 - +1.8 156,822 - +1.9 156,822 - -0.3 156,822 - -1.7 156,889 + -1.4 156,913 + HGI48_RS00660 0.12 -0.2 156,914 - HGI48_RS00660 0.12 -1.7 157,094 + HGI48_RS00660 0.30 -0.9 157,117 + HGI48_RS00660 0.32 -0.4 157,311 - HGI48_RS00660 0.51 +0.2 157,311 - HGI48_RS00660 0.51 -1.3 157,336 + HGI48_RS00660 0.54 +1.1 157,336 + HGI48_RS00660 0.54 -1.0 157,336 + HGI48_RS00660 0.54 -1.1 157,337 - HGI48_RS00660 0.54 +0.8 157,337 - HGI48_RS00660 0.54 +0.8 157,337 - HGI48_RS00660 0.54 -0.5 157,449 + HGI48_RS00660 0.65 -0.1 157,449 + HGI48_RS00660 0.65 -1.4 157,450 - HGI48_RS00660 0.65 -0.6 157,614 - HGI48_RS00660 0.82 +1.1 157,725 - -1.6 157,780 + +0.2 157,780 + -0.2 157,780 + -0.2 157,781 - -1.3 157,781 - +2.1 157,781 - +0.7 157,832 - -0.5 157,839 + -0.4 157,840 - +0.8 157,843 + +0.2 157,843 + -0.1 157,843 + -1.9 157,843 + +0.9 157,843 + -1.2 157,843 + +2.0 157,843 + -0.8 157,843 + -1.4 157,843 + -0.4 157,843 + -1.4 157,844 - +1.0 157,844 - -1.5 157,844 - -0.3 157,844 - -1.4 157,844 - -0.0 157,844 - -0.2 157,844 - -0.2 157,844 - +0.2 157,844 - -0.4 157,844 - -0.9 157,849 + -2.2 157,850 - -0.8 157,896 + +0.7 157,897 - -0.2 157,898 + -0.3 157,899 - +1.8 157,899 - -1.0 157,987 - +1.2 158,017 + +0.8 158,018 - -1.7 158,078 + -0.1 158,108 + HGI48_RS00665 0.18 -2.5 158,188 + HGI48_RS00665 0.41 -0.8 158,188 + HGI48_RS00665 0.41 +1.7 158,189 - -1.1 158,189 - HGI48_RS00665 0.42 -0.8 158,190 + HGI48_RS00665 0.42 -0.5 158,190 + HGI48_RS00665 0.42 -0.2 158,190 + HGI48_RS00665 0.42 -2.2 158,190 + HGI48_RS00665 0.42 -1.0 158,190 + HGI48_RS00665 0.42 -1.4 158,190 + HGI48_RS00665 0.42 +0.2 158,190 + HGI48_RS00665 0.42 -0.1 158,190 + -0.8 158,190 + HGI48_RS00665 0.42 -0.2 158,190 + HGI48_RS00665 0.42 -0.5 158,191 - HGI48_RS00665 0.42 +1.5 158,191 - HGI48_RS00665 0.42 -1.2 158,191 - HGI48_RS00665 0.42 +0.8 158,191 - HGI48_RS00665 0.42 +1.5 158,191 - HGI48_RS00665 0.42 -0.7 158,191 - HGI48_RS00665 0.42 -2.0 158,191 - HGI48_RS00665 0.42 -1.3 158,191 - HGI48_RS00665 0.42 -0.7 158,191 - HGI48_RS00665 0.42 +0.2 158,191 - HGI48_RS00665 0.42 -1.7 158,395 - +0.4 158,395 - +0.4 158,395 - -1.9 158,471 - HGI48_RS00670 0.20 +0.6 158,471 - HGI48_RS00670 0.20 -0.4 158,473 - HGI48_RS00670 0.20 -0.4
Or see this region's nucleotide sequence