Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20805

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
4,645,203	-				-0.2
4,645,251	+		HGI48_RS20800	0.13	+2.5
4,645,272	+		HGI48_RS20800	0.15	-0.2
4,645,312	+				-1.2
4,645,313	-		HGI48_RS20800	0.20	+0.1
4,645,349	+		HGI48_RS20800	0.23	+0.4
4,645,429	-		HGI48_RS20800	0.31	-1.1
4,645,429	-		HGI48_RS20800	0.31	-2.1
4,645,429	-		HGI48_RS20800	0.31	-1.4
4,645,429	-		HGI48_RS20800	0.31	-2.3
4,645,521	-		HGI48_RS20800	0.41	-1.3
4,645,528	+		HGI48_RS20800	0.41	-1.6
4,645,528	+		HGI48_RS20800	0.41	-0.1
4,645,589	+		HGI48_RS20800	0.48	-0.5
4,645,590	-		HGI48_RS20800	0.48	-1.1
4,645,590	-		HGI48_RS20800	0.48	+0.4
4,645,590	-		HGI48_RS20800	0.48	-0.1
4,645,590	-		HGI48_RS20800	0.48	+0.3
4,645,590	-		HGI48_RS20800	0.48	-0.4
4,645,624	+		HGI48_RS20800	0.51	+0.2
4,645,624	+		HGI48_RS20800	0.51	-1.0
4,645,659	-		HGI48_RS20800	0.55	+0.6
4,645,659	-		HGI48_RS20800	0.55	-0.2
4,645,680	-		HGI48_RS20800	0.57	-0.4
4,645,680	-		HGI48_RS20800	0.57	+0.5
4,645,680	-		HGI48_RS20800	0.57	+1.7
4,645,683	+		HGI48_RS20800	0.57	-0.1
4,645,683	+		HGI48_RS20800	0.57	+0.7
4,645,683	+		HGI48_RS20800	0.57	-0.1
4,645,683	+		HGI48_RS20800	0.57	-1.5
4,645,683	+		HGI48_RS20800	0.57	+0.1
4,645,683	+		HGI48_RS20800	0.57	+0.9
4,645,683	+		HGI48_RS20800	0.57	-0.9
4,645,684	-		HGI48_RS20800	0.57	+1.6
4,645,684	-		HGI48_RS20800	0.57	-0.1
4,645,813	+		HGI48_RS20800	0.70	-1.9
4,645,813	+		HGI48_RS20800	0.70	-0.1
4,645,813	+		HGI48_RS20800	0.70	+0.9
4,645,813	+				-1.4
4,645,813	+		HGI48_RS20800	0.70	-1.2
4,645,814	-		HGI48_RS20800	0.70	+0.6
4,645,814	-		HGI48_RS20800	0.70	+1.4
4,645,814	-		HGI48_RS20800	0.70	-0.4
4,645,814	-		HGI48_RS20800	0.70	+0.2
4,645,814	-		HGI48_RS20800	0.70	-0.9
4,645,814	-		HGI48_RS20800	0.70	-0.4
4,645,814	-		HGI48_RS20800	0.70	+1.4
4,645,814	-		HGI48_RS20800	0.70	-0.2
4,645,855	-				+1.1
4,646,031	-				-0.1
4,646,210	+		HGI48_RS20805	0.36	-0.7
4,646,210	+		HGI48_RS20805	0.36	-0.4
4,646,211	-		HGI48_RS20805	0.36	-1.1
4,646,211	-		HGI48_RS20805	0.36	+0.8
4,646,276	+		HGI48_RS20805	0.68	+0.3
4,646,276	+		HGI48_RS20805	0.68	+0.9
4,646,276	+		HGI48_RS20805	0.68	-1.8
4,646,276	+		HGI48_RS20805	0.68	-1.1
4,646,277	-		HGI48_RS20805	0.69	-1.2
4,646,336	+				-0.4
4,646,356	+				-0.7
4,646,356	+				-1.9
4,646,356	+				-0.1
4,646,357	-				-0.8
4,646,357	-				+0.5
4,646,357	-				+0.9
4,646,357	-				-1.1
4,646,359	+				-1.2
4,646,359	+				+1.0
4,646,359	+				-0.1
4,646,360	-				+0.0
4,646,360	-				-1.7
4,646,362	+				-1.1
4,646,363	-				-0.9
4,646,462	+				+0.3
4,646,462	+				-0.1
4,646,462	+				-1.5
4,646,463	-				-2.1
4,646,463	-				-1.5
4,646,480	+				+0.6
4,646,481	-				-3.6
4,646,548	+				-0.9
4,646,549	-				-0.3
4,646,633	+		HGI48_RS20810	0.12	-0.9
4,646,633	+		HGI48_RS20810	0.12	-0.4
4,646,633	+		HGI48_RS20810	0.12	-1.7
4,646,633	+		HGI48_RS20810	0.12	-2.5
4,646,633	+		HGI48_RS20810	0.12	-1.9
4,646,633	+		HGI48_RS20810	0.12	+0.9
4,646,633	+		HGI48_RS20810	0.12	-2.4
4,646,633	+		HGI48_RS20810	0.12	-1.2
4,646,634	-		HGI48_RS20810	0.12	-2.5
4,646,634	-		HGI48_RS20810	0.12	-3.2
4,646,634	-		HGI48_RS20810	0.12	-0.4
4,646,634	-		HGI48_RS20810	0.12	+1.8
4,646,634	-		HGI48_RS20810	0.12	-1.1
4,646,634	-		HGI48_RS20810	0.12	-1.2
4,646,634	-		HGI48_RS20810	0.12	-1.4
4,646,649	+		HGI48_RS20810	0.13	-0.4
4,646,670	+		HGI48_RS20810	0.16	-0.4
4,646,675	+		HGI48_RS20810	0.16	+1.9
4,646,675	+		HGI48_RS20810	0.16	-0.7
4,646,675	+		HGI48_RS20810	0.16	-1.4
4,646,675	+		HGI48_RS20810	0.16	-1.5
4,646,675	+		HGI48_RS20810	0.16	-1.1
4,646,675	+		HGI48_RS20810	0.16	-1.7
4,646,675	+		HGI48_RS20810	0.16	-1.7
4,646,675	+		HGI48_RS20810	0.16	-1.4
4,646,675	+		HGI48_RS20810	0.16	-1.5
4,646,676	-		HGI48_RS20810	0.16	-0.1
4,646,676	-		HGI48_RS20810	0.16	-1.4
4,646,676	-		HGI48_RS20810	0.16	+0.6
4,646,676	-		HGI48_RS20810	0.16	-1.7
4,646,676	-		HGI48_RS20810	0.16	-1.9
4,646,756	-		HGI48_RS20810	0.25	-1.2
4,646,789	+				-0.7
4,646,789	+		HGI48_RS20810	0.28	-0.9
4,646,790	-		HGI48_RS20810	0.28	-0.2
4,646,790	-		HGI48_RS20810	0.28	+0.9
4,646,821	+		HGI48_RS20810	0.32	-0.4
4,646,822	-		HGI48_RS20810	0.32	-0.1
4,646,828	+		HGI48_RS20810	0.32	-0.2
4,646,828	+		HGI48_RS20810	0.32	-1.2
4,646,829	-		HGI48_RS20810	0.33	-1.4
4,646,831	+		HGI48_RS20810	0.33	-1.1
4,646,915	+		HGI48_RS20810	0.42	-0.4
4,646,915	+		HGI48_RS20810	0.42	-1.1
4,646,915	+		HGI48_RS20810	0.42	-0.1
4,646,915	+		HGI48_RS20810	0.42	-3.1
4,646,916	-		HGI48_RS20810	0.42	-1.4
4,646,916	-		HGI48_RS20810	0.42	-1.4
4,646,916	-		HGI48_RS20810	0.42	-0.4
4,646,916	-		HGI48_RS20810	0.42	+0.8
4,646,916	-		HGI48_RS20810	0.42	-0.4
4,646,916	-		HGI48_RS20810	0.42	-1.1
4,646,916	-		HGI48_RS20810	0.42	-1.1
4,646,916	-		HGI48_RS20810	0.42	-2.2
4,646,916	-		HGI48_RS20810	0.42	-2.2
4,646,921	+				-1.1
4,646,921	+		HGI48_RS20810	0.42	-1.2
4,646,922	-		HGI48_RS20810	0.43	-0.7
4,646,922	-		HGI48_RS20810	0.43	-1.9
4,646,922	-		HGI48_RS20810	0.43	+0.7
4,646,922	-		HGI48_RS20810	0.43	+0.1
4,646,922	-		HGI48_RS20810	0.43	-1.2
4,646,922	-		HGI48_RS20810	0.43	-1.1
4,646,922	-		HGI48_RS20810	0.43	-2.0
4,646,922	-		HGI48_RS20810	0.43	-2.2
4,646,935	+		HGI48_RS20810	0.44	-1.5
4,646,936	-		HGI48_RS20810	0.44	-2.7
4,647,032	+		HGI48_RS20810	0.54	-2.7
4,647,238	+		HGI48_RS20810	0.76	-0.9
4,647,274	+		HGI48_RS20810	0.80	-1.1
4,647,274	+		HGI48_RS20810	0.80	-0.5
4,647,275	-		HGI48_RS20810	0.80	-0.9
4,647,275	-		HGI48_RS20810	0.80	+0.8
4,647,284	-		HGI48_RS20810	0.81	+0.9
4,647,336	-		HGI48_RS20810	0.87	-1.2